View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12694_low_12 (Length: 334)
Name: NF12694_low_12
Description: NF12694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12694_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 22365246 - 22365566
Alignment:
| Q |
1 |
aagtaaattactttaatctatgtaaatttcagtttcaacttctctattatcttaattttcttttcctattcatgaattttagttttagaacaacagtcca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
22365246 |
aagtaaattactttaatctatgtaaatttcagtttcaacttctctattatcttgattttcttttcctattcatgaattttagttttagatcaaaagtcca |
22365345 |
T |
|
| Q |
101 |
aattggaaccaacatataactgtataaatttaaaaaatctataacgaagttcaacaatttttcaatgaattcaaatcgacaaactgatgatctgaacaaa |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22365346 |
aattggaactaacatataactgtataaatttaaaaaatctataacgatgttcaacaatttttcaatgaattcaaatcgacaaactgatgatctgaacaaa |
22365445 |
T |
|
| Q |
201 |
tcaagagagaagatagaatgaaaaccatttatgttgtgtggtagtgagtgcacacaaatcaaaccattttgatagatacaaattatatggtccgctcttt |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
22365446 |
tcaagagagaagatagaatgaaaatcatttatgttgtgtggtagtgagtgcacacaaatcaaaccattttgatagacacatattatatggtccgctcttt |
22365545 |
T |
|
| Q |
301 |
ccgtcacataccatgaaagtg |
321 |
Q |
| |
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||| ||||||||||||||||| |
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| T |
22365546 |
ccgccacataccatgaaagtg |
22365566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 2788517 - 2788754
Alignment:
| Q |
1 |
aagtaaattactttaatctatgtaaatttcagtttcaacttctctattatcttaattttcttttcctattcatgaattttagttttagaacaacagtcca |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || | |||| |
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| T |
2788517 |
aagtaaattactttaatctatgtaaatttcagtttcaacttctctcttatcttaattttcttttcctattcatgaattttagttttagattaaaaatcca |
2788616 |
T |
|
| Q |
101 |
aattggaaccaacatataactgtataaatttaaaaaatctataacgaagttcaacaatttttcaatgaattcaaatcgacaaactgatgatctgaacaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||| |
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| T |
2788617 |
aattggaaccaacatataactgtataaatttaaaaaatctataacgaagttcaacaatttttaaatgaattcgaatcgacacactgatgatctgaacaaa |
2788716 |
T |
|
| Q |
201 |
tcaagagagaagatagaatgaaaaccatttatgttgtg |
238 |
Q |
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||||||||||||||||||||||||||||| |||||||| |
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| T |
2788717 |
tcaagagagaagatagaatgaaaaccattcatgttgtg |
2788754 |
T |
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