View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12694_low_14 (Length: 285)

Name: NF12694_low_14
Description: NF12694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12694_low_14
NF12694_low_14
[»] chr5 (14 HSPs)
chr5 (9-267)||(1043775-1044033)
chr5 (14-267)||(1033388-1033646)
chr5 (14-85)||(1065386-1065457)
chr5 (18-79)||(1046330-1046391)
chr5 (18-79)||(1052990-1053051)
chr5 (14-85)||(1071125-1071196)
chr5 (213-267)||(1053237-1053291)
chr5 (14-79)||(1058322-1058387)
chr5 (217-267)||(1065598-1065648)
chr5 (17-79)||(1641080-1641142)
chr5 (218-267)||(1071326-1071375)
chr5 (198-267)||(1041528-1041596)
chr5 (214-265)||(1058503-1058554)
chr5 (217-267)||(1640910-1640960)
[»] chr3 (2 HSPs)
chr3 (149-267)||(44171401-44171521)
chr3 (149-267)||(44191697-44191817)


Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 9 - 267
Target Start/End: Original strand, 1043775 - 1044033
Alignment:
Q  9 agcagagatgaaattcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaagtttacaggtttttacaaattttgtctaa 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1043775 agcacagatgaaattcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaagtttacaggtttttacaaattttgtctaa 1043874  T
Q  109 aattgaaaaataccatagtacaatattgatattttttcagaaacatgactatttgttgctttaaagcacaaggacattttttaaatctcctaacataatc 208  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1043875 aattgaaaaatgccatagtacaatattgatattttttcagaaacatgactatttgttgctttaaagcacaaggacatttttcaaatctcctaacataatc 1043974  T
Q  209 aatgtggtgcaaattgaaggttttgatggagttgaaatccatggagctcatggctacct 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1043975 aatgtggtgcaaattgaaggttttgatggagttgaaatccatggagctcatggctacct 1044033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 14 - 267
Target Start/End: Original strand, 1033388 - 1033646
Alignment:
Q  14 agatgaaattcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaagtttacaggtttttacaaattttgtctaaaattg 113  Q
    ||||||||||||| ||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||   | | | |||||||||  || |||   |    
T  1033388 agatgaaattcctaatattgtaaatgacttcagactcgctgcaagaaatgctattgaagctggtaagtttgtggatctgtacaaatttattccaaac--g 1033485  T
Q  114 aaaaat------accatagtacaatattgatattttttcagaaacatgactatttgttgctttaaagcacaa--ggacattttttaaatctcctaacata 205  Q
    |||  |      | ||||||||||||||||||||||| |||||||| ||||||||||||||||||||  ||   |||||||||  |||||  |||||||     
T  1033486 aaatgtgattcaatcatagtacaatattgatattttt-cagaaacaggactatttgttgctttaaagggcagtgggacattttgaaaatcaactaacatg 1033584  T
Q  206 atcaatgtggtgcaaattgaaggttttgatggagttgaaatccatggagctcatggctacct 267  Q
     |||||||| ||||||||| |||||||||||| |||||| | ||||||||||||||||||||    
T  1033585 ctcaatgtgatgcaaattgcaggttttgatggtgttgaacttcatggagctcatggctacct 1033646  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 1065386 - 1065457
Alignment:
Q  14 agatgaaattcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaagtttac 85  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  1065386 agatgaaattcctaacattgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaactttac 1065457  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 1046330 - 1046391
Alignment:
Q  18 gaaattcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaa 79  Q
    ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  1046330 gaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa 1046391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 1052990 - 1053051
Alignment:
Q  18 gaaattcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaa 79  Q
    ||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  1052990 gaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa 1053051  T

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Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 1071125 - 1071196
Alignment:
Q  14 agatgaaattcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaagtttac 85  Q
    ||||||||||||  | ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||    
T  1071125 agatgaaattccaaacattgtcaatgacttcagactcgctgcaagaaatgctattgaagctggtaactttac 1071196  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 213 - 267
Target Start/End: Original strand, 1053237 - 1053291
Alignment:
Q  213 tggtgcaaattgaaggttttgatggagttgaaatccatggagctcatggctacct 267  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  1053237 tggtgcaaattgtaggttttgatggggttgaaatccatggagctcatggctacct 1053291  T

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Target: chr5; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 1058322 - 1058387
Alignment:
Q  14 agatgaaattcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaa 79  Q
    ||||||||||||  |  |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1058322 agatgaaattccaaaccttgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaa 1058387  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 1065598 - 1065648
Alignment:
Q  217 gcaaattgaaggttttgatggagttgaaatccatggagctcatggctacct 267  Q
    |||||||| ||| |||||||| |||||||||||||||||||||||||||||    
T  1065598 gcaaattgcaggatttgatggggttgaaatccatggagctcatggctacct 1065648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 1641142 - 1641080
Alignment:
Q  17 tgaaattcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaa 79  Q
    ||||||||||| ||| |||||||| ||||||||||||||||| |||||||| | |||||||||    
T  1641142 tgaaattcctcgtatcgtcaatgacttcagacttgctgcaaggaatgctatagcagctggtaa 1641080  T

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Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 1071326 - 1071375
Alignment:
Q  218 caaattgaaggttttgatggagttgaaatccatggagctcatggctacct 267  Q
    ||||||| ||| |||||||| |||||||||||||||||||||||||||||    
T  1071326 caaattgcaggatttgatggggttgaaatccatggagctcatggctacct 1071375  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 267
Target Start/End: Original strand, 1041528 - 1041596
Alignment:
Q  198 ctaacataatcaatgtggtgcaaattgaaggttttgatggagttgaaatccatggagctcatggctacct 267  Q
    |||||||  |||||||||||||||||  |||||||||||| | ||||||||||| | |||||||||||||    
T  1041528 ctaacatgctcaatgtggtgcaaatttcaggttttgatgg-gatgaaatccatgcaactcatggctacct 1041596  T

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Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 1058503 - 1058554
Alignment:
Q  214 ggtgcaaattgaaggttttgatggagttgaaatccatggagctcatggctac 265  Q
    ||||||||||| ||| |||||||| |||||||||||||| ||| ||||||||    
T  1058503 ggtgcaaattgcagggtttgatggggttgaaatccatggggctaatggctac 1058554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 1640960 - 1640910
Alignment:
Q  217 gcaaattgaaggttttgatggagttgaaatccatggagctcatggctacct 267  Q
    |||||||| |||||||||||||||||| |||||||| ||||| || |||||    
T  1640960 gcaaattgcaggttttgatggagttgagatccatggggctcacggttacct 1640910  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 267
Target Start/End: Complemental strand, 44171521 - 44171401
Alignment:
Q  149 aaacatgactatttgttgctttaaagcacaa--ggacattttttaaatctcctaacataatcaatgtggtgcaaattgaaggttttgatggagttgaaat 246  Q
    ||||||||||||||||||||||||||  ||   |||||||||  |||||   ||||||  |||||||| ||||||||| |||||||||||| || |||||    
T  44171521 aaacatgactatttgttgctttaaagggcagtgggacattttgaaaatcaagtaacatgctcaatgtgatgcaaattgcaggttttgatggtgtggaaat 44171422  T
Q  247 ccatggagctcatggctacct 267  Q
     ||||||||||||||||||||    
T  44171421 tcatggagctcatggctacct 44171401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 267
Target Start/End: Complemental strand, 44191817 - 44191697
Alignment:
Q  149 aaacatgactatttgttgctttaaagcacaa--ggacattttttaaatctcctaacataatcaatgtggtgcaaattgaaggttttgatggagttgaaat 246  Q
    ||||||||||||||||||||||||||  ||   |||||||||  |||||   ||||||  |||||||| ||||||||| |||||||||||| || |||||    
T  44191817 aaacatgactatttgttgctttaaagggcagtgggacattttgaaaatcaagtaacatgctcaatgtgatgcaaattgcaggttttgatggtgtggaaat 44191718  T
Q  247 ccatggagctcatggctacct 267  Q
     ||||||||||||||||||||    
T  44191717 tcatggagctcatggctacct 44191697  T

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