View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12694_low_20 (Length: 248)
Name: NF12694_low_20
Description: NF12694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12694_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 31048971 - 31049188
Alignment:
| Q |
7 |
ttaaaccaaattttcgagagattaggtttacgagtcatcttacttatactttggtcagccttaattttttcaaacaaagagagatttacaattcacgtcc |
106 |
Q |
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| T |
31048971 |
ttaaaccaaatttttgagatattaagtttacgag-catcttacttataccttggtcaaccttaatttttccaaa----gagagatttacaattcacgccc |
31049065 |
T |
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| Q |
107 |
tatatactattcaatannnnnnnnnnnggaacaatcagagacttctaactcatacttgcaacataaaaacttcctcccgcaagtatgagtacattccatt |
206 |
Q |
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| T |
31049066 |
tatatactattcaatatttttttc---ggaacaatcagagatttctaactcatacttgcaacataaaaacttcctcccgcaagtatgagtacattccatt |
31049162 |
T |
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| Q |
207 |
catcgctaatgctccctcacaaacga |
232 |
Q |
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|||||||||||||||||||||||||| |
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| T |
31049163 |
catcgctaatgctccctcacaaacga |
31049188 |
T |
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