View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12694_low_22 (Length: 241)
Name: NF12694_low_22
Description: NF12694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12694_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 38975102 - 38974891
Alignment:
| Q |
14 |
agagacagcaaggtatgaaatagaaagcaatgtaggtcaagaccgtttgttggatgaatctgacctaccaaaactcccttaccttaaaaatatcatctat |
113 |
Q |
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| T |
38975102 |
agagacggcaaggtatgaaatagaaagcaatgtaggtcaagaccgtttgttggatgaatctgacctaccaaaactcccttaccttaaaaatatcatctat |
38975003 |
T |
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| Q |
114 |
gagacacttaggttgtacactcctgctccattgtcattgccacactcttcttcagatgagtgtattattggagggtacaaagttccacgagacactatat |
213 |
Q |
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| T |
38975002 |
gagacacttaggttgtacactcctgctccattgtcattgccacactcttcttcagatgagtgtattattggagggtacaaagttccacgagacactatat |
38974903 |
T |
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| Q |
214 |
tgcttgttaatg |
225 |
Q |
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| T |
38974902 |
tgcttgttaatg |
38974891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 208
Target Start/End: Original strand, 38955625 - 38955790
Alignment:
| Q |
43 |
atgtaggtcaagaccgtttgttggatgaatctgacctaccaaaactcccttaccttaaaaatatcatctatgagacacttaggttgtacactcctgctcc |
142 |
Q |
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| T |
38955625 |
atgtaggacaagatcgtttggttgatgaatcagaccttccgaaactaacttacctaagaaatgttatctacgagacccttcgattgtatactcctgctcc |
38955724 |
T |
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| Q |
143 |
attgtcattgccacactcttcttcagatgagtgtattattggagggtacaaagttccacgagacac |
208 |
Q |
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| T |
38955725 |
attgttattaccacactcaactgcagatgagtgcattatgggaggatacaaagttccgcgcgacac |
38955790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 14946272 - 14946370
Alignment:
| Q |
74 |
tgacctaccaaaactcccttaccttaaaaatatcatctatgagacacttaggttgtacactcctgctccattgtcattgccacactcttcttcagatga |
172 |
Q |
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| T |
14946272 |
tgaccttccaaaacttccttaccttaagaaggtcgtcctagagacacttaggatgtaccctccagctccattgctatttccacacttgtcttcagatga |
14946370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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