View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12694_low_27 (Length: 208)
Name: NF12694_low_27
Description: NF12694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12694_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 44 - 181
Target Start/End: Complemental strand, 29846265 - 29846127
Alignment:
| Q |
44 |
aaaaaagttttttgtattattacaataaacaag-tttttttgacgnnnnnnnnnnnnngaagaagaaggaaatagatgattcacgaacgttctttgcttc |
142 |
Q |
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| T |
29846265 |
aaaaaagatttttgtattattacaataaacaagatttttttgacgaaaaaaaaaagaagaagaagaaggaaatagataattcacgaacgttctatgcttt |
29846166 |
T |
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| Q |
143 |
cagcgatccacaccaaaaacccttattaacttgtcacct |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
29846165 |
cagcgatccacaccaaaaacccttattaacttgtcacct |
29846127 |
T |
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