View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12694_low_3 (Length: 429)
Name: NF12694_low_3
Description: NF12694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12694_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 46 - 422
Target Start/End: Complemental strand, 28735571 - 28735200
Alignment:
| Q |
46 |
tcaaatgctgggaaatccagtacatataaaaaccttcaaaagaagcgtggcctaaaaagtcattggtcttctgctgacaataggttctttaaaaaggtgt |
145 |
Q |
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| T |
28735571 |
tcaaatgctgggaaatccagtacatataaaaaccttcaaaagaagcgtggcctaaaaagtcattggtcttctgctgacaataggttctttaaaaaggtgt |
28735472 |
T |
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| Q |
146 |
catggtagttgattttttcttattaccaggaaactaacactgtcctctttacctactgaacatggtagctgtagttagtaaacatatagattgattgatt |
245 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28735471 |
catggtagttgaatttttcttattaccaggaaactaacactgtcctctttatctactgaacatggtagctgtagttagtaaacatatagattgatcaatt |
28735372 |
T |
|
| Q |
246 |
aacctgaaatctctggagtctagacctaccaaaatagtatgcttatgctacaaacccagttgatatttagaagattaattaatgggataaatctgttttc |
345 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28735371 |
aacctgaaatctctggagtctggacctaccaaaatagtatgc-----atacaaacccagttgatatttagaagattaattaatgggataaatctgttttc |
28735277 |
T |
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| Q |
346 |
ctcctaaaataatatagttcacattcattgattaactaaaatgttgtcttgacaactctgtttccatctctgtgctc |
422 |
Q |
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| T |
28735276 |
ctcctaaaataatatagttcacattcattgattaactaaaatgttgtcttgacaactctctttccatctctatgctc |
28735200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 6434867 - 6434936
Alignment:
| Q |
78 |
ccttcaaaagaagcgtggcctaaaaagtcattggtcttctgctgacaataggttctttaaaaaggtgtca |
147 |
Q |
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| T |
6434867 |
ccttcaaaagaagagtgaccttaaaagtcactggccttttgctgacaaaatgtcctttaaaaaggtgtca |
6434936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 392
Target Start/End: Complemental strand, 32281372 - 32281328
Alignment:
| Q |
348 |
cctaaaataatatagttcacattcattgattaactaaaatgttgt |
392 |
Q |
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||||||| ||||||||||| |||||||||||||| |||||||||| |
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| T |
32281372 |
cctaaaacaatatagttcatattcattgattaaccaaaatgttgt |
32281328 |
T |
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