View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12694_low_4 (Length: 417)
Name: NF12694_low_4
Description: NF12694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12694_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 2468152 - 2467765
Alignment:
| Q |
1 |
catctccaaatataggaattgaattcaaaccagtagcaaaatcagaagcagcaactgccggaaaagcatcttgaagtgcgaagaacgcagagaacagcat |
100 |
Q |
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| T |
2468152 |
catctccaaatataggaattgaattcaaaccagtagcaaaatcagaagcagcaactgccggaaaagcatcttgaagtgcgaagaacgcggagaacagcat |
2468053 |
T |
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| Q |
101 |
aaacttcaaaactgtcatggatgcatcatcattatcatcagaagacacattctgtgttgccaattggcattgagaatcggaattttcggcaacagagtca |
200 |
Q |
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| T |
2468052 |
aaacttcaaaactgtcatggatgcatcatca---------gaagacacattctgtgttgccaattggcattgagaatcggaattttcggcaacagagtca |
2467962 |
T |
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| Q |
201 |
tcctcggaagcacgaacgaatccctatacgaaaatgaaaataaatttgaggcattgaattgaatgaaatgaagttgaagataggttcaggaaattaccgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467961 |
tcctcggaagcacgaacgaatccctatacgaaaatgaaaataaatttgaggcattgaattgaatgaaatgaagttgaagataggttcaggaaattaccgt |
2467862 |
T |
|
| Q |
301 |
tgtagcccgaaaaatgttggtgaattgaaagcgtggtggtaatttgagattgcagcgaggagtaggaggggggaaaatggaagaggatataagtgag |
397 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2467861 |
tgtagaccgaaaaatgttggtgaattgaaagcgtggtggtaatttgagattgcagcgaggagtaggagggggaaaaatggaagaggatataagtgag |
2467765 |
T |
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