View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12694_low_6 (Length: 397)
Name: NF12694_low_6
Description: NF12694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12694_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 13 - 381
Target Start/End: Original strand, 26953191 - 26953547
Alignment:
| Q |
13 |
cactgcacatatccattgatagaaaacagtaatactgaaaagaaaactttacttctttgatatggtagatatagtcaaacaggcagaaaaggttagctaa |
112 |
Q |
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| T |
26953191 |
cactgcacatatccatcgatagaaaacagtaataccgaaaagaaaactttacttctttgatatggtagatatagtcaaacaggcagaaaaggttagctaa |
26953290 |
T |
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| Q |
113 |
atcaaataaagcatagtagtatcagtcaatactgttcagttaaattacagagatattgaaggttaagctataaacattcagacggtaataaacacatatt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26953291 |
atcaaataaagcatagtagtatcagtcaatactgttcagttaaattacagagatattgaaggttaagctataaacattcagacggtaataaacgcatatt |
26953390 |
T |
|
| Q |
213 |
gtgcttggtaacaaaaatgtcattgatgacaggtattctgtgttttatctacatgcagcatttta-ggtatggcactaagaacacattcatcaaacacac |
311 |
Q |
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||||||| || |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26953391 |
gtgcttgatagcaaaaa-------------aggtattctgtgttttatctacatgcagcattttagggtatggcactaagaacacattcatcaaacacac |
26953477 |
T |
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| Q |
312 |
attgctttggtggggaatctagataaaagactgattaatcaaatatttggtaacatgaataatttgattc |
381 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26953478 |
attgctttggtgggaaatctagataaaagactgattaatcaactatttggtaacatgaataatttgattc |
26953547 |
T |
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