View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12694_low_8 (Length: 392)
Name: NF12694_low_8
Description: NF12694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12694_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 24 - 377
Target Start/End: Original strand, 33817169 - 33817522
Alignment:
| Q |
24 |
agaatggagtttgttgattgaagttttaacaaagtttggttttaatgcaacttcccgtaattggataaaggccatactggattcagctcacttatctatc |
123 |
Q |
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| T |
33817169 |
agaatggagttttttgattgaagttttaacaaagtttggttttagtacaacttcccgtaattggataatggccacactggattcagctcacttatctatc |
33817268 |
T |
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| Q |
124 |
tctatcaatggtacccaacatggttacttttaagtgtactttaagtgtactcgcttttctatcttgcagaagaagtgttgagcaggggcatttctaaacc |
223 |
Q |
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| T |
33817269 |
tctatcaatggtacccaacatggttacttttaagtgtactttaagtgtactcgcttttctatcttgcagaagaagtgttgagcacgggcatttctaaact |
33817368 |
T |
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| Q |
224 |
ggtggataatggtgatttagagttgatgtcaagcactagaagctgtgatgttccatttcatactttgtatgcagatcacataatgatatttcgcaatggg |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33817369 |
ggtggataatggtgatttagagttgatgtcaagcactagaagttgtgatgttccatttcatactttgtatgcagatcacataatgatatttagcaatggg |
33817468 |
T |
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| Q |
324 |
aaggcatcttgcataaattcactgataaaccttttcactagatatgcacaggtt |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33817469 |
aaggcatcttgcataaattcactgataaaccttttcactagatatgcacaggtt |
33817522 |
T |
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