View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12695_high_1 (Length: 450)
Name: NF12695_high_1
Description: NF12695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12695_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 35 - 446
Target Start/End: Complemental strand, 27185946 - 27185535
Alignment:
| Q |
35 |
ataatagaagtaattaatagaacatcaccaaataattccatctataagtcttaatctattaaacatgtgttaattgtgatttgcagtataagattctaaa |
134 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27185946 |
ataatggaagtaattaatagaacatcaccaaataattccatctataagtcttaatctattaaacatgtgttaattgtgatttgcagtataagattctaaa |
27185847 |
T |
|
| Q |
135 |
gcatgacattctttctttcaaatatggatggtaatatataattagagaataaaaaataaatttacatgtcatgtaaatgtagctcagttggtagctccat |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27185846 |
gcatgacattctttctttcaaatatggatggtaatatataattagagaataaaaaataaatttacatgtcatgtaaatgtagctcagttggtagctccat |
27185747 |
T |
|
| Q |
235 |
ttctccacacttaaagcgtgtgagtctaaccactagactattaaccttatgggtgttgtggaaagtccggaataagaagattttcaatgggagaaatttt |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27185746 |
ttctccacacttaaagcgtgtgagtctaaccactagactattaaccttatgggtgttgtggaaagtccggaatgagaagattttcaatgggagaaatttt |
27185647 |
T |
|
| Q |
335 |
gaggtggatgagatagtggaagagatcaaggggttgtcttggaggtggtttttgagaagaacgaatataccggtgtgtctcttgttgttttggctgggtt |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27185646 |
gaggtggatgagatagtggaagagatcaaggggttgtcttggaggtggtttttgagaagaacgaatataccggtgtgtctcttgttgttttggctgggtt |
27185547 |
T |
|
| Q |
435 |
tctgtgctgctc |
446 |
Q |
| |
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| T |
27185546 |
tccgtgctgctc |
27185535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 27229433 - 27229510
Alignment:
| Q |
55 |
aacatcaccaaataattccatctataagtcttaatctattaaacatgtgttaattgtgatttgcagtataagattcta |
132 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
27229433 |
aacatcaccaaataattccatgtatcagtcttaatctattgaacatgtgttaattgtgatttgcaggataagattcta |
27229510 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 274
Target Start/End: Original strand, 31684777 - 31684816
Alignment:
| Q |
235 |
ttctccacacttaaagcgtgtgagtctaaccactagacta |
274 |
Q |
| |
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||||||| ||||||| |||||||||||||||||||||||| |
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| T |
31684777 |
ttctccaaacttaaaacgtgtgagtctaaccactagacta |
31684816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 332
Target Start/End: Complemental strand, 37748111 - 37748060
Alignment:
| Q |
281 |
ttatgggtgttgtggaaagtccggaataagaagattttcaatgggagaaatt |
332 |
Q |
| |
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|||||||| |||||||||||||||||| | |||||||| || |||||||||| |
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| T |
37748111 |
ttatgggtcttgtggaaagtccggaatgacaagatttttaacgggagaaatt |
37748060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 281 - 411
Target Start/End: Original strand, 919338 - 919468
Alignment:
| Q |
281 |
ttatgggtgttgtggaaagtccggaataagaagattttcaatgggagaaattttgaggtggatgagatagtggaagagatcaaggggttgtcttggaggt |
380 |
Q |
| |
|
||||||||||||||||| || |||||| |||||| ||| ||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||| |
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| T |
919338 |
ttatgggtgttgtggaaggttcggaatgagaagacttttaatgggagaaattttgatgtggaagagatagtggaggagatcaaggtgttgtcttggaggt |
919437 |
T |
|
| Q |
381 |
ggtttttgagaagaacgaatataccggtgtg |
411 |
Q |
| |
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|||||||||| ||||| ||||| || ||||| |
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| T |
919438 |
ggtttttgagtagaactaatatcccagtgtg |
919468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 43406043 - 43405998
Alignment:
| Q |
229 |
ctccatttctccacacttaaagcgtgtgagtctaaccactagacta |
274 |
Q |
| |
|
||||| |||||||||| ||| | ||||||||||||||||||||||| |
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| T |
43406043 |
ctccacttctccacacataatgtgtgtgagtctaaccactagacta |
43405998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 281 - 417
Target Start/End: Original strand, 29973641 - 29973777
Alignment:
| Q |
281 |
ttatgggtgttgtggaaagtccggaataagaagattttcaatgggagaaattttgaggtggatgagatagtggaagagatcaaggggttgtcttggaggt |
380 |
Q |
| |
|
||||||||||||||||| || |||||| |||||| ||| ||||| |||||||||||||||| ||||||||||| ||||| |||| ||||||||| |||| |
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| T |
29973641 |
ttatgggtgttgtggaaggttcggaatgagaagacttttaatggaagaaattttgaggtgggagagatagtggaggagatgaaggtgttgtcttgaaggt |
29973740 |
T |
|
| Q |
381 |
ggtttttgagaagaacgaatataccggtgtgtctctt |
417 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||| ||||| |
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| T |
29973741 |
ggtttttgagtagaactaatatcccggtgtgcctctt |
29973777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 21648751 - 21648703
Alignment:
| Q |
281 |
ttatgggtgttgtggaaagtccggaataagaagattttcaatgggagaa |
329 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
21648751 |
ttatgggtgttgtggaaagtccggaacgataagattttcaatgggagaa |
21648703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 31068926 - 31068885
Alignment:
| Q |
235 |
ttctccacacttaaagcgtgtgagtctaaccactagactatt |
276 |
Q |
| |
|
|||||||||||||| | |||||| |||||||||||||||||| |
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| T |
31068926 |
ttctccacacttaatgtgtgtgaatctaaccactagactatt |
31068885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 378
Target Start/End: Original strand, 32017039 - 32017079
Alignment:
| Q |
338 |
gtggatgagatagtggaagagatcaaggggttgtcttggag |
378 |
Q |
| |
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||||| ||||| |||||||||||||||| |||||||||||| |
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| T |
32017039 |
gtggaggagatggtggaagagatcaaggtgttgtcttggag |
32017079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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