View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12695_high_4 (Length: 241)

Name: NF12695_high_4
Description: NF12695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12695_high_4
NF12695_high_4
[»] chr3 (3 HSPs)
chr3 (13-241)||(27785751-27785979)
chr3 (21-241)||(27781946-27782166)
chr3 (82-219)||(27765392-27765530)


Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 27785751 - 27785979
Alignment:
Q  13 actgatatcagttgctagtgaatctggattagtcaagttttcagcttgagccggaaaatctatccatgttgctttacgatagagattttttactatattt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27785751 actgatatcagttgctagtgaatctggattagtcaagttttcagcttgagccggaaaatctatccatgttgctttacgatagagattttttactatattt 27785850  T
Q  113 ccataatcaacagattcgagttcttgatttttatcatgaactgaggccaatgccacgaaaatttcaaagatagaatctggattctcaaaagaagttgcat 212  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27785851 ccataatcaacagattctagttcttgatttttatcatgaactgaggccaatgccacgaaaatttcaaagatagaatctggattctcaaaagaagttgcat 27785950  T
Q  213 cagaacacagaatgaatgttccaaaaggc 241  Q
    |||||||||||||||||||||||||||||    
T  27785951 cagaacacagaatgaatgttccaaaaggc 27785979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 27781946 - 27782166
Alignment:
Q  21 cagttgctagtgaatctggattagtcaagttttcagcttgagccggaaaatctatccatgttgctttacgatagagattttttactatatttccataatc 120  Q
    |||||||||| |||||   |||||||| |||||| || ||||  | |||| |||  |||  ||||||| |||||||| |||||||  |||||||||||||    
T  27781946 cagttgctagcgaatccttattagtcatgttttctgcctgagtggaaaaacctaagcattctgctttaagatagagagtttttacagtatttccataatc 27782045  T
Q  121 aacagattcgagttcttgatttttatcatgaactgaggccaatgccacgaaaatttcaaagatagaatctggattctcaaaagaagttgcatcagaacac 220  Q
    ||| ||||| |||| || |||||||||||| |||||| |||| |||| || |||||| |||||||||||||| |||| || |||||||||||||||| ||    
T  27782046 aactgattcaagtttttcatttttatcatggactgagaccaacgccatgagaatttccaagatagaatctgggttctgaagagaagttgcatcagaagac 27782145  T
Q  221 agaatgaatgttccaaaaggc 241  Q
    |  || |||||||||||||||    
T  27782146 atgataaatgttccaaaaggc 27782166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 27765392 - 27765530
Alignment:
Q  82 tgctttacgatagagatttttta-ctatatttccataatcaacagattcgagttcttgatttttatcatgaactgaggccaatgccacgaaaatttcaaa 180  Q
    ||||||| ||||| ||||||||| |||| ||||| |||||||||| ||||||||| |  ||||||||||| ||  |||||||||||| || |||||| ||    
T  27765392 tgctttaagatagtgattttttaactatgtttccttaatcaacagcttcgagttcatagtttttatcatggacacaggccaatgccatgagaatttccaa 27765491  T
Q  181 gatagaatctggattctcaaaagaagttgcatcagaaca 219  Q
    || ||||||||| |||||||| || ||||||||||||||    
T  27765492 gagagaatctgggttctcaaacgatgttgcatcagaaca 27765530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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