View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12695_high_5 (Length: 235)
Name: NF12695_high_5
Description: NF12695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12695_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 2369401 - 2369217
Alignment:
| Q |
8 |
gtgagaagaaagagatgaggagcagcatcgttcatgattcctcttaaaataacattggggatacggaggcaaaatagattctgataatgggttccaaaaa |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| |
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| T |
2369401 |
gtgataagaaagagatgaggagcagcatcgttcatgattcctcttaaaataacattggggatatggaggcaaaatagattatgataatgggttccagaaa |
2369302 |
T |
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| Q |
108 |
ttggccgtgattgagaatgagaaacatgtcataagatatcttcataacaagttttaataagagaatccaaacagacctaaataaa |
192 |
Q |
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| T |
2369301 |
ttggccgtgattgagaatgagaaacatgtcataagatatcttcataacaagttttaataagacaatccaaacagacctaaataaa |
2369217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 36698015 - 36697896
Alignment:
| Q |
8 |
gtgagaagaaagagatgaggagcagcatcgttcatgattcctcttaaaataacattggggatacggaggcaaaatagattctgataatgggttccaaaaa |
107 |
Q |
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|||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
36698015 |
gtgataagaaagagatgaggagcaacatcgttcatgattcctcttaaaataacatggaggatatggaggcaaaatagattctgataatgggttccagaaa |
36697916 |
T |
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| Q |
108 |
ttggccgtgattgagaatga |
127 |
Q |
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| T |
36697915 |
ttggccgtgattgagaatga |
36697896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 20104686 - 20104598
Alignment:
| Q |
8 |
gtgagaagaaagagatgaggagcagcatcgttcatgattcctcttaaaataacattggggatacggaggcaaaatagattctgataatgg |
97 |
Q |
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| T |
20104686 |
gtgataagaaagagacgaggagcagcatcctccatgattcttcttaaaataaca-tggggatatggaggccaaatagatttcgataatgg |
20104598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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