View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12695_low_2 (Length: 418)

Name: NF12695_low_2
Description: NF12695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12695_low_2
NF12695_low_2
[»] chr8 (2 HSPs)
chr8 (17-417)||(20186623-20187029)
chr8 (17-417)||(20205690-20206098)
[»] chr7 (1 HSPs)
chr7 (17-417)||(44290202-44290610)


Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 417
Target Start/End: Complemental strand, 20187029 - 20186623
Alignment:
Q  17 cttttcactttcttcttaagctttttaattatactcaaacttgatcaaaaattgaaaaagttcacttttttatttgtgcccttaatttgggagtttt-at 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  20187029 cttttcactttcttcttaagctttttaattatactcaaacttgatcaaaaattgaaaaagttcacttttttatttgtgcccttaatttgggagtttttat 20186930  T
Q  116 aatatttgggannnnnnnnnnn-----gtgaatggaagggatgattggagttcaatggcggtttcactttcaacgaacgcagtgaaattgtattcaccag 210  Q
    |||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20186929 aatatttgggattttttttttttttttgtgaatggaagggatgattggagttcaatggcggtttcactttcaacgaacgcagtgaaattgtattcaccag 20186830  T
Q  211 tgatgggtcaatattatggagagttcaagggtcacactgcaactatcaatcagattttgttttcgggtcattctaatcccaatattctaagctcttgttc 310  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20186829 tgatgggtcaatattatggagagtgcaagggtcacactgcaactatcaatcagattttgttttcgggtcattctaatcccaatattctaagctcttgttc 20186730  T
Q  311 ttccgatggtactatcaggacttgggacactagaacatttcagcaggttgattttttgttgttactaaggttattatttggtttttctctccataattat 410  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  20186729 ttcagatggtactatcaggacttgggacactagaacatttcagcaggttgattttttgttgttactaatgttattatttggtttttctctccataattat 20186630  T
Q  411 tggtgcc 417  Q
    |||||||    
T  20186629 tggtgcc 20186623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 417
Target Start/End: Complemental strand, 20206098 - 20205690
Alignment:
Q  17 cttttcactttcttcttaagctttttaattatactcaaacttgatcaaaaattgaaaaagttcacttttttatttgtgcccttaatttgggagtttt-at 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  20206098 cttttcactttcttcttaagctttttaattatactcaaacttgatcaaaaattgaaaaagttcacttttttatttgtgcccttaatttgggagtttttat 20205999  T
Q  116 aatatttgggannnnnnnnnnn-------gtgaatggaagggatgattggagttcaatggcggtttcactttcaacgaacgcagtgaaattgtattcacc 208  Q
    |||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20205998 aatatttgggattttttttttttttttttgtgaatggaagggatgattggagttcaatggcggtttcactttcaacgaacgcagtgaaattgtattcacc 20205899  T
Q  209 agtgatgggtcaatattatggagagttcaagggtcacactgcaactatcaatcagattttgttttcgggtcattctaatcccaatattctaagctcttgt 308  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20205898 agtgatgggtcaatattatggagagtgcaagggtcacactgcaactatcaatcagattttgttttcgggtcattctaatcccaatattctaagctcttgt 20205799  T
Q  309 tcttccgatggtactatcaggacttgggacactagaacatttcagcaggttgattttttgttgttactaaggttattatttggtttttctctccataatt 408  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20205798 tcttcagatggtactatcaggacttgggacactagaacatttcagcaggttgattttttgttgttactaatgttattatttggtttttctctccataatt 20205699  T
Q  409 attggtgcc 417  Q
    |||||||||    
T  20205698 attggtgcc 20205690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 417
Target Start/End: Complemental strand, 44290610 - 44290202
Alignment:
Q  17 cttttcactttcttcttaagctttttaattatactcaaacttgatcaaaaattgaaaaagttcacttttttatttgtgcccttaatttgggagtttt-at 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  44290610 cttttcactttcttcttaagctttttaattatactcaaacttgatcaaaaattgaaaaagttcacttttttatttgtgcccttaatttgggagtttttat 44290511  T
Q  116 aatatttgggannnnnnnnnnn-------gtgaatggaagggatgattggagttcaatggcggtttcactttcaacgaacgcagtgaaattgtattcacc 208  Q
    |||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44290510 aatatttgggattttttttttttttttttgtgaatggaagggatgattggagttcaatggcggtttcactttcaacgaacgcagtgaaattgtattcacc 44290411  T
Q  209 agtgatgggtcaatattatggagagttcaagggtcacactgcaactatcaatcagattttgttttcgggtcattctaatcccaatattctaagctcttgt 308  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44290410 agtgatgggtcaatattatggagagtgcaagggtcacactgcaactatcaatcagattttgttttcgggtcattctaatcccaatattctaagctcttgt 44290311  T
Q  309 tcttccgatggtactatcaggacttgggacactagaacatttcagcaggttgattttttgttgttactaaggttattatttggtttttctctccataatt 408  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  44290310 tcttcagatggtactatcaggacttgggacactagaacatttcagcaggttgattttttgttgttactaatgttattatttggtttttctctccataatt 44290211  T
Q  409 attggtgcc 417  Q
    |||||||||    
T  44290210 attggtgcc 44290202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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