View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12695_low_3 (Length: 379)
Name: NF12695_low_3
Description: NF12695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12695_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 11 - 364
Target Start/End: Complemental strand, 29552905 - 29552555
Alignment:
| Q |
11 |
cagagacatttggggccaatccagatttcaaagcttcatttattatagcctcagtatctgatttccaccattcacctaaacaaaattgaaaattgtaagg |
110 |
Q |
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| T |
29552905 |
cagagacatttggggccaatccagatttcaaagcttcatttattatagcctcagtatctgatttccaccattcacctaaacaaaattgaaaattgtaagg |
29552806 |
T |
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| Q |
111 |
tttatgaaccatgatccctataccatttnnnnnnnnnnncactctatgaattgatgtatttattagcaaaaaatataaaggaaaaggtagaagaacaaac |
210 |
Q |
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| T |
29552805 |
tttatgaaccatgatccctataccatttaaaaaaaaa---actctatgaagtgatgtatttattagcaaaaaatataaaggaaaaggtagaagaactaac |
29552709 |
T |
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| Q |
211 |
tcaatatgataacttgttccatgtggggtctaggaaaagggtaaggaactccaagcttaggcaaaatgacaatagcaccatgtacagttgctctaagcca |
310 |
Q |
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| T |
29552708 |
tcaatatgataacttgttccatgtggggtctaggaaaagggtaaggaactccaagcttaggcaaaatgacaatagcaccatgtacagttgctctaagcca |
29552609 |
T |
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| Q |
311 |
aagtatatgtgcatgccaccaaagtgttcctctttgtcctgtgagggtaaaatt |
364 |
Q |
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| T |
29552608 |
aagtatatgtgcatgccaccaaagtgttcctctttgtcctgtgagggtaaaatt |
29552555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 361
Target Start/End: Complemental strand, 35054065 - 35053971
Alignment:
| Q |
267 |
ttaggcaaaatgacaatagcaccatgtacagttgctctaagccaaagtatatgtgcatgccaccaaagtgttcctctttgtcctgtgagggtaaa |
361 |
Q |
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| T |
35054065 |
ttaggcaaaatgacaatagcaccatgcattgtagcccttagccaagtgatatgtgcatgccatagaagtgtgcctctttgacctgtaatggtaaa |
35053971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 361
Target Start/End: Complemental strand, 35070377 - 35070283
Alignment:
| Q |
267 |
ttaggcaaaatgacaatagcaccatgtacagttgctctaagccaaagtatatgtgcatgccaccaaagtgttcctctttgtcctgtgagggtaaa |
361 |
Q |
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| T |
35070377 |
ttaggcaaaatgacaatagcaccatgcattgtagcccttagccaagtgatatgtgcatgccatagaagtgtgcctctttgacctgtaatggtaaa |
35070283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 219 - 352
Target Start/End: Complemental strand, 25091732 - 25091599
Alignment:
| Q |
219 |
ataacttgttccatgtggggtctaggaaaagggtaaggaactccaagcttaggcaaaatgacaatagcaccatgtacagttgctctaagccaaagtatat |
318 |
Q |
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| T |
25091732 |
ataacttgttccatatgtggtttgggaaaagggtaaggaactccaagcttaggtaaaatgactatggcaccatggacagtagccctaagccaaaggacat |
25091633 |
T |
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| Q |
319 |
gtgcatgccaccaaagtgttcctctttgtcctgt |
352 |
Q |
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| T |
25091632 |
gagcatgccaccaaagtgtgcctctttggcctgt |
25091599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 25091896 - 25091821
Alignment:
| Q |
18 |
atttggggccaatccagatttcaaagcttcatttattatagcctcagtatctgatttccaccattcacctaaacaa |
93 |
Q |
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| T |
25091896 |
atttggagccaatccagatttcaaagcttcatttattatagcctcagtatctgatttccaccattcacctaaacaa |
25091821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 4383032 - 4382968
Alignment:
| Q |
16 |
acatttggggccaatccagatttcaaagcttcatttattatagcctcagtatctgatttccacca |
80 |
Q |
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| T |
4383032 |
acatttggtgccaatcctgattttagagcttcattgataacagcttcagtatcagatttccacca |
4382968 |
T |
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