View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12695_low_4 (Length: 331)
Name: NF12695_low_4
Description: NF12695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12695_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 7009009 - 7009335
Alignment:
| Q |
1 |
atctcagtccagttgtaaccaacaatggacactgcagcaccatcaacaaatacctaagtggtattctcctcgtcatttgtggtttcaactgtgcttttac |
100 |
Q |
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| T |
7009009 |
atctcagtccagttgtaaccaacaatggacactgcagcaccatcaacaaatacctaagtggtattctcctcgtcatttgtggtttcaactgtgcttttac |
7009108 |
T |
|
| Q |
101 |
ttccttcactgacagttacacaggaagcgatggccagagacactatggtattgttaccacgaatggtctctggccatctccagcatcagattcagttgat |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||| |
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| T |
7009109 |
ttccttcactgacagttacaccggaagcgatggccagagacactatggtattgttaccatgaatggtctctggccatctccgggatcagattcagttgat |
7009208 |
T |
|
| Q |
201 |
ttgtcggcatataagcttagatttggagactttgtccatgctttcttgtcggtggttgtgttcgcggtgctgggactgcttgacactaatgttgtgcatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7009209 |
ttgtcggcatataagcttagatttggagactttgtccatgctttcttgtcggtgattgtgttcgcggtgctgggactgcttgacactaatgttgtgcatt |
7009308 |
T |
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| Q |
301 |
gcttttacccgaaatttgagtcgtctg |
327 |
Q |
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||||||||||||||||||||||||||| |
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| T |
7009309 |
gcttttacccgaaatttgagtcgtctg |
7009335 |
T |
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