View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12695_low_5 (Length: 282)
Name: NF12695_low_5
Description: NF12695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12695_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 6623894 - 6624145
Alignment:
| Q |
13 |
gaatcaagccaaatgtggtgactttcaactccataattgatgcattccggccaactttggaatatggagttcattgttcttcgcaatccattgagtatcc |
112 |
Q |
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| T |
6623894 |
gaatcaagccaaatttggtgactttcaactccaaaattgatgcattccggccaactttggaatatggagttcattgttcttcgcaatccattgagtatac |
6623993 |
T |
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| Q |
113 |
gagtgaacaatcttcttctatgcttatcgatgatgctttttagaataaggccggggatgaccgccggatcttgaagatgttcgagcaacttgctgctgaa |
212 |
Q |
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| T |
6623994 |
gagtgaacaatcttcttctatgcttatcgatgatgctttttagaataaggccggggatga---ccggatcttgaagatgttcgagcaacatgctgctgaa |
6624090 |
T |
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| Q |
213 |
aaagcatg-gacacaatgaaggataggaggggacgacaagaccatcactacatat |
266 |
Q |
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| T |
6624091 |
aaagcatgtgacacaatgaaggataggaggggacaacaagaccatcactacatat |
6624145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 5594414 - 5594155
Alignment:
| Q |
13 |
gaatcaagccaaatgtggtgactttcaactccataattgatgcattccg------gccaactttggaatatggagttcattgttcttcgcaatccattga |
106 |
Q |
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| T |
5594414 |
gaatcaagccaaatgttgtcactttcaactccataattgatgcctccagacaatcgccaactctggaatatggggttcatggttcttcacaagccgttga |
5594315 |
T |
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| Q |
107 |
gtatccgagtgaacaatcttcttctatgcttatcgatgatgctttttagaataaggccggggatgaccgccggatcttgaagatgttcgagcaacttgct |
206 |
Q |
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| T |
5594314 |
gtatccaactgaacaattgtcttctatgcttatcgatggtgcttttcagaataagacaggggatga---ccggatcttgaaaatgttcgagcagcttgct |
5594218 |
T |
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| Q |
207 |
gctgaaaaagcatgg--acacaatgaaggataggaggggacgacaagaccatcactacatattg |
268 |
Q |
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| T |
5594217 |
gctgaaaaagc-tggtcatagagagaaggataggaagggacgacaagaccaacactgcatattg |
5594155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 217
Target Start/End: Original strand, 5606498 - 5606705
Alignment:
| Q |
13 |
gaatcaagccaaatgtggtgactttcaactccataattgatgcattccg------gccaactttggaatatggagttcattgttcttcgcaatccattga |
106 |
Q |
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| T |
5606498 |
gaataaagccaaatgtggtcactttcaactccataattgatgcatctcaacaatcgccaactttggagtatggagttaatggatcttctgatgccattga |
5606597 |
T |
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| Q |
107 |
gtatccgagtgaacaatcttcttctatgcttatcgatgatgctttttagaataaggccggggatgaccgccggatcttgaagatgttcgagcaacttgct |
206 |
Q |
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| T |
5606598 |
ctatccgattgaacaatcgtctcctattgttattgatggtgcttttcagaataagccgggggaggaccg---gattttgaagatgttcgagcaacttgct |
5606694 |
T |
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| Q |
207 |
gctgaaaaagc |
217 |
Q |
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| T |
5606695 |
gctgaaaaagc |
5606705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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