View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12695_low_6 (Length: 241)

Name: NF12695_low_6
Description: NF12695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12695_low_6
NF12695_low_6
[»] chr3 (3 HSPs)
chr3 (13-241)||(27785751-27785979)
chr3 (21-241)||(27781946-27782166)
chr3 (82-219)||(27765392-27765530)


Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 27785751 - 27785979
Alignment:
Q  13 actgatatcagttgctagtgaatctggattagtcaagttttcagcttgagccggaaaatctatccatgttgctttacgatagagattttttactatattt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27785751 actgatatcagttgctagtgaatctggattagtcaagttttcagcttgagccggaaaatctatccatgttgctttacgatagagattttttactatattt 27785850  T
Q  113 ccataatcaacagattcgagttcttgatttttatcatgaactgaggccaatgccacgaaaatttcaaagatagaatctggattctcaaaagaagttgcat 212  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27785851 ccataatcaacagattctagttcttgatttttatcatgaactgaggccaatgccacgaaaatttcaaagatagaatctggattctcaaaagaagttgcat 27785950  T
Q  213 cagaacacagaatgaatgttccaaaaggc 241  Q
    |||||||||||||||||||||||||||||    
T  27785951 cagaacacagaatgaatgttccaaaaggc 27785979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 27781946 - 27782166
Alignment:
Q  21 cagttgctagtgaatctggattagtcaagttttcagcttgagccggaaaatctatccatgttgctttacgatagagattttttactatatttccataatc 120  Q
    |||||||||| |||||   |||||||| |||||| || ||||  | |||| |||  |||  ||||||| |||||||| |||||||  |||||||||||||    
T  27781946 cagttgctagcgaatccttattagtcatgttttctgcctgagtggaaaaacctaagcattctgctttaagatagagagtttttacagtatttccataatc 27782045  T
Q  121 aacagattcgagttcttgatttttatcatgaactgaggccaatgccacgaaaatttcaaagatagaatctggattctcaaaagaagttgcatcagaacac 220  Q
    ||| ||||| |||| || |||||||||||| |||||| |||| |||| || |||||| |||||||||||||| |||| || |||||||||||||||| ||    
T  27782046 aactgattcaagtttttcatttttatcatggactgagaccaacgccatgagaatttccaagatagaatctgggttctgaagagaagttgcatcagaagac 27782145  T
Q  221 agaatgaatgttccaaaaggc 241  Q
    |  || |||||||||||||||    
T  27782146 atgataaatgttccaaaaggc 27782166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 27765392 - 27765530
Alignment:
Q  82 tgctttacgatagagatttttta-ctatatttccataatcaacagattcgagttcttgatttttatcatgaactgaggccaatgccacgaaaatttcaaa 180  Q
    ||||||| ||||| ||||||||| |||| ||||| |||||||||| ||||||||| |  ||||||||||| ||  |||||||||||| || |||||| ||    
T  27765392 tgctttaagatagtgattttttaactatgtttccttaatcaacagcttcgagttcatagtttttatcatggacacaggccaatgccatgagaatttccaa 27765491  T
Q  181 gatagaatctggattctcaaaagaagttgcatcagaaca 219  Q
    || ||||||||| |||||||| || ||||||||||||||    
T  27765492 gagagaatctgggttctcaaacgatgttgcatcagaaca 27765530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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