View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12696_high_1 (Length: 763)

Name: NF12696_high_1
Description: NF12696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12696_high_1
NF12696_high_1
[»] chr3 (1 HSPs)
chr3 (18-753)||(46587480-46588217)


Alignment Details
Target: chr3 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 18 - 753
Target Start/End: Original strand, 46587480 - 46588217
Alignment:
Q  18 gttggagactctgaaggttggcgtgcaggcactaactacactcaatgggccatcaaaaatagccccttccaaataaatgacacattgggtatgtatcatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46587480 gttggagactctgaaggttggcgtgcaggcactaactacactcaatgggccatcaaaaatagccccttccaaataaatgacacattgggtatgtatcatc 46587579  T
Q  118 acaaata-tcaattaacannnnnnnnnnnnngacactaacacgacaccaacgcatttaattatatttaatcactttgannnnnnn-caaattattatcaa 215  Q
    ||||||| ||||||||||             ||||||||||| |||||||| ||||||||||||||||||||||||||        ||||||||||||||    
T  46587580 acaaataatcaattaacatttttgtttttt-gacactaacacaacaccaacacatttaattatatttaatcactttgattttttttcaaattattatcaa 46587678  T
Q  216 atgtcgctgtgtgtccattgtttgcgcatatatacatattttttcttcatcatttgattgatggattaattttggtttgtgcatacgtaaataatgcagt 315  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46587679 aggtcgctgtgtgtccattgtttgcgcatatatacatattttttcttcatcatttgattgatggattaattttggtttgtgcatacgtaaataatgcagt 46587778  T
Q  316 gttcaagtatccccctacaggaaattccacggttgttcccagcgtttacttgctaccgaatatgtggagttacacgacgtgtgaatttagaggagcaaag 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46587779 gttcaagtatccccctacaggaaattccacggttgttcccagcgtttacttgctaccgaatatgtggagttacacgacgtgtgaatttagaggagcaaag 46587878  T
Q  416 ttgcttggtagtgctgaacaaggtggtggtgaggggataaagattgagctgaatcagttgaagccttattactttgcctctgatgaaggtaatgcctatg 515  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  46587879 ttgcttggtagtgctgatcaaggtggtggtgaggggataaagattgagctgaatcaattgaagccttattactttgcctctgatgaaggcaatgcctatg 46587978  T
Q  516 actgtattgctggactcaccaagttcattgctgttccatctacacgttccttttaatttagccctcatggcccaattgaatcaagttttttccttttaag 615  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  46587979 actgtattgctggactcaccaagttcattgctgttccatctacacgttccttttaatttaaccctcatggcccaattgaatcaagttatttccttttaag 46588078  T
Q  616 gtagttgaattcaatatataaataaaatggatggtttcaatctgttttttctttcctgaagtatcgaaagnnnnnnnnttatgttttttattgtggtttg 715  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||        ||||||||||||||||||||||    
T  46588079 gtagttgaattcaaaatataaataaaatggatggtttccatctgttttttctttcctggagtatcgaaagaaaaaaaattatgttttttattgtggtttg 46588178  T
Q  716 tg-tacctagaaagaaatgatgatgtatttttgtctctg 753  Q
    || |||||||| | | | |||||||||||||||||||||    
T  46588179 tgctacctagataaatacgatgatgtatttttgtctctg 46588217  T

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