View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12696_high_7 (Length: 223)

Name: NF12696_high_7
Description: NF12696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12696_high_7
NF12696_high_7
[»] chr4 (3 HSPs)
chr4 (1-212)||(25744023-25744235)
chr4 (1-209)||(25740326-25740535)
chr4 (2-171)||(17383269-17383438)
[»] chr2 (2 HSPs)
chr2 (2-175)||(8534851-8535023)
chr2 (116-175)||(36450074-36450133)
[»] chr1 (2 HSPs)
chr1 (107-187)||(12510035-12510115)
chr1 (43-186)||(12513869-12514013)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 25744235 - 25744023
Alignment:
Q  1 caaataagtagaataatattagacaaaaatgaaggtacaaatttgataacatcaaagcatgaa-gataaatcacctgaatacagcgaaaacaaaagaagg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| ||||  |||||||||||||||    
T  25744235 caaataagtagaataatattagacaaaaatgaaggtacaaatttgataacatcaaagcgtgaaagttaaatcacctgattacattgaaaacaaaagaagg 25744136  T
Q  100 caagctgaagaaaatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaacaaatatctgcagagaacatattaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25744135 caagctgaagaaaatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaacaaatatctgcagagaacatattaa 25744036  T
Q  200 cataatcagtgaa 212  Q
    |||||||||||||    
T  25744035 cataatcagtgaa 25744023  T

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Target: chr4; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 25740535 - 25740326
Alignment:
Q  1 caaataagtagaataatattagacaaaaatgaaggtacaaatttgataacatcaaagcatgaa-gataaatcacctgaatacagcgaaaacaaaagaagg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| ||||  |||||||||||||||    
T  25740535 caaataagtagaataatattagacaaaaatgaaggtacaaatttgataacatcaaagcgtgaaagttaaatcacctgattacattgaaaacaaaagaagg 25740436  T
Q  100 caagctgaagaaaatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaacaaatatctgcagagaacatattaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  25740435 caagctgaagaaaatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaacaaataactgcagacaacatgttaa 25740336  T
Q  200 cataatcagt 209  Q
    ||||||||||    
T  25740335 cataatcagt 25740326  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 171
Target Start/End: Complemental strand, 17383438 - 17383269
Alignment:
Q  2 aaataagtagaataatattagacaaaaatgaaggtacaaatttgataacatcaaagcatgaa-gataaatcacctgaatacagcgaaaacaaaagaaggc 100  Q
    ||||||||| ||||||||  |||||||||||||||||| ||||||||| ||||| |  |||| || ||||||| |||  |||  |||||| | |||| ||    
T  17383438 aaataagtataataatatgtgacaaaaatgaaggtacatatttgataatatcaa-gtgtgaaagacaaatcacttgatgacatagaaaactatagaaagc 17383340  T
Q  101 aagctgaagaaaatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaac 171  Q
    |||||||||| ||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||    
T  17383339 aagctgaagataatgtatggaatgagtagtgatgtaagaatgtttaccttccaatttgtgcgatccaaaac 17383269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 2 - 175
Target Start/End: Complemental strand, 8535023 - 8534851
Alignment:
Q  2 aaataagtagaataatattagacaaaaatgaaggtacaaatttgataacatcaaagcatgaa-gataaatcacctgaatacagcgaaaacaaaagaaggc 100  Q
    |||||||||||||||||| |||||||||||||||| || ||||||||| ||||| |  |||| || |||||| ||||  |||  |||||| | ||||  |    
T  8535023 aaataagtagaataatatgagacaaaaatgaaggtgcatatttgataatatcaa-gtgtgaaagacaaatcatctgatgacatagaaaactatagaaatc 8534925  T
Q  101 aagctgaagaaaatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaac 175  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8534924 aagctgaagaaaatgtatggaatgagtagtgatgtaagaa-gtttgtcttccagtttgtgcgatccaaaaccaac 8534851  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 36450133 - 36450074
Alignment:
Q  116 tatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaac 175  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36450133 tatggaatgagtagtgatgtaagaatgtttgtcttccagtatgtgcgatccaaaaccaac 36450074  T

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Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 107 - 187
Target Start/End: Complemental strand, 12510115 - 12510035
Alignment:
Q  107 aagaaaatgtatggaatgagtagtgatgtaagaatgtttgtcttccagtttgtgcgatccaaaaccaacaaatatctgcag 187  Q
    ||||||||||| ||||||||||||||||| | |||||| |||||||||||||| |||||||||| ||||||||| ||||||    
T  12510115 aagaaaatgtagggaatgagtagtgatgtgaaaatgttggtcttccagtttgtacgatccaaaatcaacaaataactgcag 12510035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 43 - 186
Target Start/End: Complemental strand, 12514013 - 12513869
Alignment:
Q  43 ttgataacatcaaagcatgaagata-aatcacctgaatacagcgaaaacaaaagaaggcaagctgaagaaaatgtatggaatgagtagtgatgtaagaat 141  Q
    |||||||||  ||||||||||||   ||||||||||| ||| ||||||   | ||||||| |||||| ||||||||||||| |||||||||||| | | |    
T  12514013 ttgataacactaaagcatgaagagctaatcacctgaagacaccgaaaatccatgaaggcaggctgaaaaaaatgtatggaacgagtagtgatgtgaaagt 12513914  T
Q  142 gtttgtcttccagtttgtgcgatccaaaaccaacaaatatctgca 186  Q
    ||| |||| ||||||||| |||||||||  ||||| ||| |||||    
T  12513913 gttggtctcccagtttgtacgatccaaactcaacagataactgca 12513869  T

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