View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12696_low_1 (Length: 763)

Name: NF12696_low_1
Description: NF12696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12696_low_1
NF12696_low_1
[»] chr3 (1 HSPs)
chr3 (18-753)||(46587480-46588217)


Alignment Details
Target: chr3 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 18 - 753
Target Start/End: Original strand, 46587480 - 46588217
Alignment:
Q  18 gttggagactctgaaggttggcgtgcaggcactaactacactcaatgggccatcaaaaatagccccttccaaataaatgacacattgggtatgtatcatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46587480 gttggagactctgaaggttggcgtgcaggcactaactacactcaatgggccatcaaaaatagccccttccaaataaatgacacattgggtatgtatcatc 46587579  T
Q  118 acaaata-tcaattaacannnnnnnnnnnnngacactaacacgacaccaacgcatttaattatatttaatcactttgannnnnnn-caaattattatcaa 215  Q
    ||||||| ||||||||||             ||||||||||| |||||||| ||||||||||||||||||||||||||        ||||||||||||||    
T  46587580 acaaataatcaattaacatttttgtttttt-gacactaacacaacaccaacacatttaattatatttaatcactttgattttttttcaaattattatcaa 46587678  T
Q  216 atgtcgctgtgtgtccattgtttgcgcatatatacatattttttcttcatcatttgattgatggattaattttggtttgtgcatacgtaaataatgcagt 315  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46587679 aggtcgctgtgtgtccattgtttgcgcatatatacatattttttcttcatcatttgattgatggattaattttggtttgtgcatacgtaaataatgcagt 46587778  T
Q  316 gttcaagtatccccctacaggaaattccacggttgttcccagcgtttacttgctaccgaatatgtggagttacacgacgtgtgaatttagaggagcaaag 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46587779 gttcaagtatccccctacaggaaattccacggttgttcccagcgtttacttgctaccgaatatgtggagttacacgacgtgtgaatttagaggagcaaag 46587878  T
Q  416 ttgcttggtagtgctgaacaaggtggtggtgaggggataaagattgagctgaatcagttgaagccttattactttgcctctgatgaaggtaatgcctatg 515  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  46587879 ttgcttggtagtgctgatcaaggtggtggtgaggggataaagattgagctgaatcaattgaagccttattactttgcctctgatgaaggcaatgcctatg 46587978  T
Q  516 actgtattgctggactcaccaagttcattgctgttccatctacacgttccttttaatttagccctcatggcccaattgaatcaagttttttccttttaag 615  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  46587979 actgtattgctggactcaccaagttcattgctgttccatctacacgttccttttaatttaaccctcatggcccaattgaatcaagttatttccttttaag 46588078  T
Q  616 gtagttgaattcaatatataaataaaatggatggtttcaatctgttttttctttcctgaagtatcgaaagnnnnnnnnttatgttttttattgtggtttg 715  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||        ||||||||||||||||||||||    
T  46588079 gtagttgaattcaaaatataaataaaatggatggtttccatctgttttttctttcctggagtatcgaaagaaaaaaaattatgttttttattgtggtttg 46588178  T
Q  716 tg-tacctagaaagaaatgatgatgtatttttgtctctg 753  Q
    || |||||||| | | | |||||||||||||||||||||    
T  46588179 tgctacctagataaatacgatgatgtatttttgtctctg 46588217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University