View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12696_low_2 (Length: 395)
Name: NF12696_low_2
Description: NF12696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12696_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 30 - 391
Target Start/End: Complemental strand, 42224259 - 42223910
Alignment:
| Q |
30 |
tatttggttagaatgtggtggtcaggttaagcttaatgggtctagattcaaccacagtattttggcccaaaatgtagtccaggacataggcacgtgtaca |
129 |
Q |
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| T |
42224259 |
tatttggttagaatgtggtggtcaggttaagcttaatgggtctagattcaaccacagtattttggcccaaaatgtag------------gcatgtgtaca |
42224172 |
T |
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| Q |
130 |
tctttatttacctttagagagaccaattgttaaacaaaaaatatttcatgcagaactgattacactgtgattggtatgcattaatgttcccgatcgatgc |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42224171 |
tctttatttacctttagagagaccaattgttaaacaaaaaatatttcatgcagaactgattacactgtgattggtatgcattaatgttcccgat----gc |
42224076 |
T |
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| Q |
230 |
atacttaatagcgaaatactgataaacta----ttatagttcttctttttgaagaatctatagatatatttaagccaagaagactacacttattttgagt |
325 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42224075 |
atacttaatagcgaaatactgataaactaaatattatagttcttctttttgaagaatctataaatatatttaagccaagaagactacacttattttgagt |
42223976 |
T |
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| Q |
326 |
tggtgcaggcttgaaacgagacgagaagttagtgggcttggagtcaaggaatttctttctctgctc |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42223975 |
tggtgcaggcttgaaacgagacgagaagttagtgggcttggagtcaaggaatttctttctctgctc |
42223910 |
T |
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