View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12696_low_3 (Length: 333)
Name: NF12696_low_3
Description: NF12696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12696_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 45981167 - 45981337
Alignment:
| Q |
19 |
tgataagtgtatgcacaaatggcaaggactgaaacatgcacattagcggtttccttagcaagtgcaaaagtttggtctatgtttcacctatatcatgatg |
118 |
Q |
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| T |
45981167 |
tgataagtgtatgcacaactggcaaggactgaaacatgcacattaacggtttccttagcaagtgcaaaagtttggtctatgtttcacctatatcatgatg |
45981266 |
T |
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| Q |
119 |
tctgagtttgagatgaaagatttgggggaattatcctatttccttagaatgaaatttcttgacacttcatg |
189 |
Q |
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| T |
45981267 |
tctgagtttgagatgaaagatttgggggaattatcctatttccttaaaatgaaatttcttgacacttcatg |
45981337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 221 - 323
Target Start/End: Original strand, 45981334 - 45981436
Alignment:
| Q |
221 |
catgacacgacgataacagttgtataatgtttgattgtaaaactgttacagggacatgacaaactaaagatagaaaacaagacaaaaactaaaattcttc |
320 |
Q |
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| T |
45981334 |
catgacacgacaacaacagttatataatgttcgattgtaaaactgttgtagggacatgacaagctaaagatagaaaacaagataaaaactaaaattcttc |
45981433 |
T |
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| Q |
321 |
ttc |
323 |
Q |
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| T |
45981434 |
ttc |
45981436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 45991840 - 45991912
Alignment:
| Q |
27 |
gtatgcacaaatggcaaggactgaaacatgcacattagcggtttccttagcaagtgcaaaagtttggtctatg |
99 |
Q |
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| T |
45991840 |
gtatacaccaatggcaaggactgaaacatgcaggctagtgggttccttagcaagtgcaagaggttggtctatg |
45991912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 285
Target Start/End: Original strand, 10320222 - 10320270
Alignment:
| Q |
238 |
agttgtataatgtttga-ttgtaaaactgttacagggacatgacaaact |
285 |
Q |
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| T |
10320222 |
agttgtataatgtttgatttgtaaaaccgttttagggacatgacaaact |
10320270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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