View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12696_low_5 (Length: 278)
Name: NF12696_low_5
Description: NF12696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12696_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 113 - 268
Target Start/End: Original strand, 2244629 - 2244776
Alignment:
| Q |
113 |
gatatattctcctctgtaaatcagattttttcatacggaaaagtcagagatcgaac--gtgtgtgaagtatttgagtcgcttaccacccgttcaaaccgc |
210 |
Q |
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| T |
2244629 |
gatatattctcctttgtaaatcagattttttcatacggaaaagtcagagatcgaacgtgtgtgtgaagtatttgagtcgcttaccacccgttcaaaccgc |
2244728 |
T |
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| Q |
211 |
cacccgcacaacccatgtgctcttatggacgaaattgggtggctatatatcatctgtg |
268 |
Q |
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| T |
2244729 |
cacccgcacaaccc----------atggacgaaattgggtggctatatatcatctgtg |
2244776 |
T |
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Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 2244552 - 2244628
Alignment:
| Q |
1 |
cagaaatcttgtccactatgtacctcttttcaccttcatcgatcttggataagtttgttagtaggtatattcagcattgat |
81 |
Q |
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| T |
2244552 |
cagaaatcttgtccactatgtacctcttttcaccttc----atcttggataagtttgttagtaggtatattcagcattgat |
2244628 |
T |
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