View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12696_low_9 (Length: 218)
Name: NF12696_low_9
Description: NF12696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12696_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 5207074 - 5206888
Alignment:
| Q |
17 |
acaagtgtcctcctcatcaagcattcctcctcttctatttcttcacaaattttatcaactgcatcaacatcctatatgaaatgtagatggaaaaatacac |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5207074 |
acaagtgtcctcctcatcaagcattcctcctcttctatttcttcacaaattttatcaactgcatcaacatcctatatgaaatgtagatggaaaaatacac |
5206975 |
T |
|
| Q |
117 |
ttgttaagcatcaatagaagacatgaaaaagatgtatnnnnnnnttaacaacaaatgaataacagcatcaacaaaccagattctgtg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
5206974 |
ttgttaagcatcaatagaagacatgaaaaagatgtataaaaaaattaacaacaaatgaataacagcatcaacaaaccagtttctgtg |
5206888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University