View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12698_high_1 (Length: 762)
Name: NF12698_high_1
Description: NF12698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12698_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 637; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 12 - 743
Target Start/End: Original strand, 42211862 - 42212577
Alignment:
| Q |
12 |
agcacagatagataaagaccctgatcctgttatactcaaaaggctctctgagaagttgcatctgagaagctgcatctgaggactaagaattacacgaatt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42211862 |
agcacagatagataaagaccctgatcctgttatactcaaaaggctctctgagaagttgcatctgagaagctgcatctgaggactaagaattacacgaatt |
42211961 |
T |
|
| Q |
112 |
ggtcataataggcaacggagaactagaagagtagaagacaattttgaaaccgtctcatcccttcttaggaaactgaaagactgcgtgctcacagaaaatc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42211962 |
ggtcataataggcaacggagaactagaaga--------cagttttgaaaccgtctcatcccttcttaggaaactgaaagactgcgtgctcacagaaaatc |
42212053 |
T |
|
| Q |
212 |
ctgaggttgatacctatgactctatgagagcgagaatagtttcaattaagcaccagtcgattttcgatgtcctatatctcttgaactaatgaaagatcct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42212054 |
ctgaggttgatacctatgactctatgagagcgagaatagtttcaattaagcaccagtcgattttcgatgtcctatatctcttgaactaatgaaagatcct |
42212153 |
T |
|
| Q |
312 |
ataactgtctccacccgtcaggtattatccacaatcctttttgtgcgaaacattgttctgatggtgtcaattatgattattgatgaaattcctactttat |
411 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42212154 |
ataattgtctccaccggtcaggtattatccacaatcctttttgtgcgaaacattgttctgatggtgtcaattatgattattgatgaaattcctactttat |
42212253 |
T |
|
| Q |
412 |
tttgcagacatatgaaagatcctgcattcaaaaatggcatgatgctggtcacataacctgccctaaaacacagcagacacttttgcaaacatcccttact |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42212254 |
tttgcagacatatgaaagatcctgcattcaaaaatggcatgatgctggtcacagaacctgccctaaaacacagcagacacttttgcaaacatccc----- |
42212348 |
T |
|
| Q |
512 |
cagttactcctaactacgttttgaagagtctgattggtttatggtgtgatagcaatggtgttgaactaccaaagaagcaagggagttacagaacnnnnnn |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42212349 |
---ttactcctaactacgttttgaagagtctgattggtttatggtgtgatagcaatggtgttgaactaccaaagaagcaagggagttacagaacaaaaaa |
42212445 |
T |
|
| Q |
612 |
ntctggatccagtctttcagattgtgacagaactgctatcaaagctttattggttaagctaacacgtaatgatattgagcagcaaagggtggctgatgat |
711 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42212446 |
atctggatccagtctttcagattgtgacagaactgctatcaaagctttattggttaagctaacacgtaatgatattgagcagcaaagggtggctgatgat |
42212545 |
T |
|
| Q |
712 |
gagctccggttgctagctggctaagaggaatg |
743 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
42212546 |
gagctccggttgctagctggctaagaggaatg |
42212577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 12 - 743
Target Start/End: Original strand, 42202994 - 42203709
Alignment:
| Q |
12 |
agcacagatagataaagaccctgatcctgttatactcaaaaggctctctgagaagttgcatctgagaagctgcatctgaggactaagaattacacgaatt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42202994 |
agcacagatagataaagaccctgatcctgttatactcaaaaggctctctgagaagttgcatctgagaagctgcatctgaggactaagaattacacgaatt |
42203093 |
T |
|
| Q |
112 |
ggtcataataggcaacggagaactagaagagtagaagacaattttgaaaccgtctcatcccttcttaggaaactgaaagactgcgtgctcacagaaaatc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42203094 |
ggtcataataggcaacggagaactagaaga--------cagttttgaaaccgtctcatcccttcttaggaaactgaaagactgcgtgctcacagaaaatc |
42203185 |
T |
|
| Q |
212 |
ctgaggttgatacctatgactctatgagagcgagaatagtttcaattaagcaccagtcgattttcgatgtcctatatctcttgaactaatgaaagatcct |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42203186 |
ctgaggttgatacctatgactctatgagagcgagaatagtttcaattaagcaccagtcgattttcgatgtcctatatctcttgaactaatgaaagatcct |
42203285 |
T |
|
| Q |
312 |
ataactgtctccacccgtcaggtattatccacaatcctttttgtgcgaaacattgttctgatggtgtcaattatgattattgatgaaattcctactttat |
411 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42203286 |
ataattgtctccaccggtcaggtattatccacaatcctttttgtgcgaaacattgttctgatggtgtcaattatgattattgatgaaattcctactttat |
42203385 |
T |
|
| Q |
412 |
tttgcagacatatgaaagatcctgcattcaaaaatggcatgatgctggtcacataacctgccctaaaacacagcagacacttttgcaaacatcccttact |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42203386 |
tttgcagacatatgaaagatcctgcattcaaaaatggcttgatgctggtcacagaacctgccctaaaacacagcagacacttttgcatacatccc----- |
42203480 |
T |
|
| Q |
512 |
cagttactcctaactacgttttgaagagtctgattggtttatggtgtgatagcaatggtgttgaactaccaaagaagcaagggagttacagaacnnnnnn |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42203481 |
---ttactcctaactacgttttgaagagtctgattggtttatggtgtgatagcaatggtgttgaactaccaaagaagcaagggagttacagaacaaaaaa |
42203577 |
T |
|
| Q |
612 |
ntctggatccagtctttcagattgtgacagaactgctatcaaagctttattggttaagctaacacgtaatgatattgagcagcaaagggtggctgatgat |
711 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42203578 |
atctggatccagtctttcagattgtgacagaactgctatcaaagctttattggttaagctaacacgtaatgatattgagcagcaaagggtggctgatgat |
42203677 |
T |
|
| Q |
712 |
gagctccggttgctagctggctaagaggaatg |
743 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
42203678 |
gagctccggttgctagctggctaagaggaatg |
42203709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 98 - 725
Target Start/End: Complemental strand, 42421306 - 42420688
Alignment:
| Q |
98 |
gaattacacgaattggtcataataggcaacggagaactagaagagtagaagacaattttgaaaccgtctcatcccttcttaggaaactgaaagactgcgt |
197 |
Q |
| |
|
|||||||| ||||||||||||| | ||||||||||||||| ||| || |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42421306 |
gaattacatgaattggtcataacaagcaacggagaactaggaga--------cagttttgaaaccgtctcatctcttcttaggaaactgaaagactgcgt |
42421215 |
T |
|
| Q |
198 |
gctcacagaaaatcctgaggttgatacctatgactctatgagagcgagaatagtttcaattaagcaccagtc----------------gattttcgatgt |
281 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| || |||||| ||| |||||||||||| ||| |||||||| ||| |
|
|
| T |
42421214 |
gctcgcagaaaatcctgaggttgatacctatgac--------agtgagaat-gttccaattaagcaccggtctcctgtaatcccagatgattttcggtgt |
42421124 |
T |
|
| Q |
282 |
cctatatctcttgaactaatgaaagatcctataactgtctccacccgtcaggtattatccacaatcctttttgtgcgaaacattgttctgatggtgtcaa |
381 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||| ||||| ||| ||||||||||||| |||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
42421123 |
cctatatctcttgaactaatgaaagaccctgtaatcgtctcaaccggtcaggtattatcgacaatcctttttgtgcgaaacaatgttctgatgatgtcag |
42421024 |
T |
|
| Q |
382 |
ttatgattattgatgaaattcctactttattttgcagacatatgaaagatcctgcattcaaaaatggcatgatgctggtcacataacctgccctaaaaca |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42421023 |
ctatgattattgatgaaattcctactttattttgcagacatatgaaagatcctgcattcaaaaatggcatgatgctggtcacagaacctgccctaaaaca |
42420924 |
T |
|
| Q |
482 |
cagcagacacttttgcaaacatcccttactcagttactcctaactacgttttgaagagtctgattggtttatggtgtgatagcaatggtgttgaactacc |
581 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42420923 |
cagcagacacttttgcaaacaaccc--------ttactcctaactacgttttgaagagtctgattggtttatggtgtgatagcaatggtgttgaactacc |
42420832 |
T |
|
| Q |
582 |
aaagaagcaagggagttacagaacnnnnnnntctggatccagtctttcagattgtgacagaactgctatcaaagctttattggttaagctaacacgtaat |
681 |
Q |
| |
|
||||||||||||||||| |||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
42420831 |
aaagaagcaagggagttgcagaacaaagaaatctggaaccagtctttcagattgtgacaaaactgctatcaaagctttattggataagctaacaagtaat |
42420732 |
T |
|
| Q |
682 |
gatattgagcagcaaagggtggctgatgatgagctccggttgct |
725 |
Q |
| |
|
|||||||| |||||||||| ||||| || ||||||||||||||| |
|
|
| T |
42420731 |
gatattgaacagcaaagggcggctgctggtgagctccggttgct |
42420688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 98 - 509
Target Start/End: Original strand, 42217915 - 42218332
Alignment:
| Q |
98 |
gaattacacgaattggtcataataggcaacggagaactagaagagtagaagacaattttgaaaccgtctcatcccttcttaggaaactgaaagactgcgt |
197 |
Q |
| |
|
|||||||||||||||||||||| | | ||||||||||||| ||| || || |||||||| |||||||||||||||||||||||||| ||||| | |
|
|
| T |
42217915 |
gaattacacgaattggtcataaaaagtaacggagaactaggagac-agttttgaaagttgaaaccatctcatcccttcttaggaaactgaaaaactgcat |
42218013 |
T |
|
| Q |
198 |
gctcacagaaaatcctgaggttgatacctatgactctatgagagcgagaatagtttcaattaagcaccagtc----------------gattttcgatgt |
281 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| || ||| |||| ||||||||||||||| ||| |||||||||||| |
|
|
| T |
42218014 |
gctcgcagaaaatcctaaggttgatacctatg--------agggcgcgaat-gtttcaattaagcactggtctcgtgtaatcccagaggattttcgatgt |
42218104 |
T |
|
| Q |
282 |
cctatatctcttgaactaatgaaagatcctataactgtctccacccgtcaggtattatccacaatcctttttgtgcgaaacattgttctgatggtgtcaa |
381 |
Q |
| |
|
||||||||||||||| ||| | |||||||| ||| |||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42218105 |
cctatatctcttgaattaagggaagatcctgtaattgtctcaaccggtcaggtattatccacaatcctttttgtgtgaaacattgttctgatggtgtcgg |
42218204 |
T |
|
| Q |
382 |
ttatgattattgatgaaattcctactttattttgcagacatatgaaagatcctgcattcaaaaatggcatgatgctggtcacataacctgccctaaaaca |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | |
|
|
| T |
42218205 |
ttatgattattgatgaaattcctactttattttgcagacatatgaaagatcctgcattcaaaaatgacttgatgctggtcacataacctgccctaaaata |
42218304 |
T |
|
| Q |
482 |
cagcagacacttttgcaaacatccctta |
509 |
Q |
| |
|
||| ||||||||||||| |||||||||| |
|
|
| T |
42218305 |
cagtagacacttttgcatacatccctta |
42218332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 413 - 725
Target Start/End: Complemental strand, 42409172 - 42408865
Alignment:
| Q |
413 |
ttgcagacatatgaaagatcctgcattcaaaaatggcatgatgctggtcacataacctgccctaaaacacagcagacacttttgcaaacatcccttactc |
512 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||| |||||||||||||| ||| ||| | ||||||||||||| ||||| | | ||| ||||||||| |
|
|
| T |
42409172 |
ttgcggacatatgaaagatcttgcattcaaaaattatttgatgctggtcacagaacttgcgcgaaaacacagcagatactttgg-atacagcccttactc |
42409074 |
T |
|
| Q |
513 |
agttactcctaactacgttttgaagagtctgattggtttatggtgtgat-agcaatggtgttgaactaccaaagaa---gcaagggagttacagaacnnn |
608 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |||||||| | ||||| |
|
|
| T |
42409073 |
--------ctaaccatgttttgaagagtctgattggtttatggtgtgaacagcaatggtgtttaactaacaaagaaaaagcaagggaactgtagaacaaa |
42408982 |
T |
|
| Q |
609 |
nnnntctggatccagtctttcagattgtgacagaactgctatcaaagctttattggttaagctaacacgtaatgatattgagcagcaaagggtggctgat |
708 |
Q |
| |
|
||||| ||| |||||||||||| |||||||| ||||||||||| ||||||| ||||| |||| |||||| |||||| ||||||| || |||| | |
|
|
| T |
42408981 |
gaaatctgggaccaatctttcagattgcgacagaaccgctatcaaagcattattggataagcaaacaagtaatggtattgaacagcaaatgggcgctgct |
42408882 |
T |
|
| Q |
709 |
gatgagctccggttgct |
725 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
42408881 |
ggtgagctccggttgct |
42408865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 42421403 - 42421338
Alignment:
| Q |
12 |
agcacagatagataaagaccctgatcctgttatactcaaaaggctctctgagaagttgcatctgag |
77 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42421403 |
agcacagaaagataaagaccctgatcctgctatactcaaaagactctctgagaagttgcatctgag |
42421338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 640 - 725
Target Start/End: Original strand, 42218340 - 42218424
Alignment:
| Q |
640 |
agaactgctatcaaagctttattggttaagctaacacgtaatgatattgagcagcaaagggtggctgatgatgagctccggttgct |
725 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||| || |||||| ||||| || ||||||| ||||||| |
|
|
| T |
42218340 |
agaactgctatcaaagctttattggataagctaacaagtaatgatattgaacaaaaaagggcggctgctg-tgagctctggttgct |
42218424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 42217818 - 42217878
Alignment:
| Q |
12 |
agcacagatagataaagaccctgatcctgttatactcaaaaggctctctgagaagttgcat |
72 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| |||||||| | | |||||||||||||| |
|
|
| T |
42217818 |
agcacagaaagataaagaccctgatcctgctatcctcaaaagacccactgagaagttgcat |
42217878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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