View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12698_high_16 (Length: 312)
Name: NF12698_high_16
Description: NF12698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12698_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 39 - 302
Target Start/End: Complemental strand, 20638322 - 20638060
Alignment:
| Q |
39 |
acaatgtattaaatcaaatgtattagaagcttgatgattactcaaaggaaatgtttctctagtttgcttagctctttggcatgtatcacaaactttattt |
138 |
Q |
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| T |
20638322 |
acaatgtattaaatcaaatgtattagaagcttgatgattactcaaaggaaatgtttctctagtttgcttagctctttggcatgtatcacaaactttattt |
20638223 |
T |
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| Q |
139 |
tgtaactcactaactctacccccattacaattagagactaattgagtagttttccaagatggatgtcccaaacgcttgtgccatacttcaagctgattcg |
238 |
Q |
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| T |
20638222 |
tgtaa-tcactaactctacccccattacaattagagactaattgagtagttttccaagatggatgtcccaaacgcttgtgccatacttcaagctgattcg |
20638124 |
T |
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| Q |
239 |
ttccttcaactttgcaagctttcactttcgaaacttctcggaagaagtagagtccatccctttg |
302 |
Q |
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| T |
20638123 |
ttccttcaactttgcaagctttcactttcggaacttctcggaagaagtagagtccatccctttg |
20638060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 20 - 289
Target Start/End: Complemental strand, 33157534 - 33157259
Alignment:
| Q |
20 |
tatatgctccctataaatcacaatgtattaaatcaaatgtattagaagcttgatgattactcaaaggaaatgtttctctagtttgcttagctctttggca |
119 |
Q |
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| T |
33157534 |
tatatgctccccataaatcacaatgtatcaaatcaaatatattagaagctttattattgctcaatggaaatgtttctctagtttgcttagctctttggca |
33157435 |
T |
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| Q |
120 |
tgtatcacaaactttattttgtaactcactaac--tct----acccccattacaattagagactaattgagtagttttccaagatggatgtcccaaacgc |
213 |
Q |
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| T |
33157434 |
tgtatcacaaaatttatttgataactcactaacattcttaccactaccactgccattagaaattaaatgagtagttttccaagatggatgtcccaaacgc |
33157335 |
T |
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| Q |
214 |
ttgtgccatacttcaagctgattcgttccttcaactttgcaagctttcactttcgaaacttctcggaagaagtaga |
289 |
Q |
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| T |
33157334 |
ttgtgtcatacttctagttgattcatcccttcaactctgcaagccttcaattttggaatttcttggaaaaagtaga |
33157259 |
T |
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