View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12698_high_3 (Length: 623)
Name: NF12698_high_3
Description: NF12698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12698_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 144 - 608
Target Start/End: Original strand, 41019813 - 41020277
Alignment:
| Q |
144 |
tttctgtttgtaatccaatatctttacaatgaataaaccaagactagtggtcacctgagcaagccattgtcaacaaacacacaatgaagtctatccccaa |
243 |
Q |
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| T |
41019813 |
tttccgtttgtaatccaatatctttacaatgaataaaccaagactagtggtcacctgagcaagccattgtcaacaaaaacacaatgaagtctatccccaa |
41019912 |
T |
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| Q |
244 |
tggctttatgaactatagtagcagcaacagtggaatcaacaccaccagataaggcacaaatgacatgttcatcaggccccactgtattattaatgacttt |
343 |
Q |
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| T |
41019913 |
tggctttatgaactatagtagcagcaacagtggaatcaacaccaccagataaggcacaaatgacatgttcgtcaggccccactgtattattaatgacttt |
41020012 |
T |
|
| Q |
344 |
gatttcttcctccaacacatcctccatcttccacccagctgaaatcccacaaacatcaaatagaaaatgcttcagtgtttccattccttccggtgtatga |
443 |
Q |
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| T |
41020013 |
gatttcttcctccaacacatcctccatcttccacccagctgaaatcccacaaacatcaaatagaaaatgcttcagtgtttccattccttccggtgtatga |
41020112 |
T |
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| Q |
444 |
gtcaccttccaaaaaagaacaaataacattgaatttaattcatacacatagtcaaactgaatatttcttacactaccaatcaataaaatcgttgaaaaca |
543 |
Q |
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| T |
41020113 |
gtcaccttccaaaaaagaacaaataacattcaatttaattcatacacatagtcaaactgaatatttattacactaccaatcaataagatcgttggaaaca |
41020212 |
T |
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| Q |
544 |
tttgactttaatcctaactgcttgtgaagtcaatcaaatgtttctattgttgacatgcaaaactt |
608 |
Q |
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| T |
41020213 |
tttgactttaatcctaactacttgtgaagtcaatcaaatgtttctagtgttgacatgcaaaactt |
41020277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 41019669 - 41019772
Alignment:
| Q |
1 |
ttgtaagaaatggttctgcagcatcaacacactcaaccggtaaatgaagatcctttttaaaggtttccatcacacgttcctgctccttatacctatagac |
100 |
Q |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41019669 |
ttgtaagaaattggtctgcagcatcaacacactcaaccggtaaatgaagatcctttttaaaggtttccatcacacgttcctgctccttatacctatagac |
41019768 |
T |
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| Q |
101 |
acag |
104 |
Q |
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|||| |
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| T |
41019769 |
acag |
41019772 |
T |
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