View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12698_high_4 (Length: 536)
Name: NF12698_high_4
Description: NF12698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12698_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Complemental strand, 17470863 - 17470347
Alignment:
| Q |
1 |
gaacaccggtcgcaacatcgccggaatcttattattccccggcaatctttgatataatgtaacaaaaagtaccaaataatgtgcaataccaagagnnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17470863 |
gaacaccggtcgcaacatcgccggaatcttattattccccggcaatctttgatataatgtaacaaaaagtaccaaataatgtgcaataccaagagaaaaa |
17470764 |
T |
|
| Q |
101 |
nngcatattgcactctctttccaacccatttgtgcagcagctagtgcagcaaccaagttaccaataacagacatttgactcgtcggattcgcaaccatcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17470763 |
aagcatattgcactctctttccaacccatttgtgcagcagctagtgcagcaaccaagttaccaatgacagacatttgactcgtcggattcgcaaccatcg |
17470664 |
T |
|
| Q |
201 |
acaaaaacatcttccctttagtaaaccactgaccatagattttcacatcaagaataaccacaggaacaacaaacaataaccagaggattttgtaatgaag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17470663 |
acaaaaacatcttccctttagtaaaccactgaccataaattttcacatcaagaataaccacaggaacaacaaacaataaccagaggattttgtaatgaag |
17470564 |
T |
|
| Q |
301 |
tgctgcaggtggtacaattggtgatgattgtaacaaaagtagccaagaaatccatggagcaaacatgtagtttacaccaatttggttgaagaattcttct |
400 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17470563 |
tgctgcaggtggtacaattggcgatgattgtaacaaaagtaaccaagaaatccatggagcaaacatgtagtttacaccaatttggttgaagaattcttct |
17470464 |
T |
|
| Q |
401 |
ttaactttatcaaagtgaagtaaacattttagaagatagagaaaagagagtgtgagtagtgtgaataaggctagggaccataagagagtaaaagctgttg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17470463 |
ttaactttatcaaagtgaagtaaacattttagaagatagagaaaagagagtgtgagtagtgtgaataaggctagggaccataagagagtaaaagctgttg |
17470364 |
T |
|
| Q |
501 |
agggtatcattgtaaat |
517 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
17470363 |
agggtatcattgtaaat |
17470347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 52780138 - 52780081
Alignment:
| Q |
210 |
tcttccctttagtaaaccactgaccatagattttcacatcaagaataaccacaggaac |
267 |
Q |
| |
|
|||||||||||||||||||||| || || ||||| ||||| |||| |||||| ||||| |
|
|
| T |
52780138 |
tcttccctttagtaaaccactggccgtaaattttaacatcgagaacaaccaccggaac |
52780081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University