View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12698_high_5 (Length: 500)

Name: NF12698_high_5
Description: NF12698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12698_high_5
NF12698_high_5
[»] chr8 (9 HSPs)
chr8 (17-483)||(44689884-44690350)
chr8 (348-483)||(44680619-44680754)
chr8 (26-173)||(37964385-37964532)
chr8 (39-173)||(27409938-27410073)
chr8 (55-173)||(27411005-27411124)
chr8 (26-174)||(37963448-37963597)
chr8 (26-127)||(7274419-7274521)
chr8 (42-86)||(35919237-35919281)
chr8 (211-279)||(45447074-45447142)
[»] chr2 (14 HSPs)
chr2 (26-268)||(31559294-31559537)
chr2 (72-280)||(9262677-9262885)
chr2 (102-274)||(31558022-31558195)
chr2 (43-120)||(43517851-43517929)
chr2 (20-120)||(28165858-28165962)
chr2 (104-258)||(7317479-7317634)
chr2 (44-114)||(30547821-30547892)
chr2 (26-120)||(40127442-40127537)
chr2 (26-126)||(5696137-5696238)
chr2 (20-120)||(44904730-44904836)
chr2 (101-164)||(22053308-22053371)
chr2 (101-168)||(22060291-22060358)
chr2 (26-75)||(30545994-30546042)
chr2 (44-118)||(44905952-44906028)
[»] chr1 (15 HSPs)
chr1 (26-347)||(9419557-9419877)
chr1 (43-347)||(28360769-28361078)
chr1 (26-150)||(27524466-27524591)
chr1 (39-173)||(28253383-28253519)
chr1 (39-142)||(37401206-37401311)
chr1 (26-127)||(43882243-43882345)
chr1 (39-113)||(37402399-37402474)
chr1 (39-120)||(12097709-12097791)
chr1 (44-120)||(13223115-13223193)
chr1 (40-116)||(35381586-35381663)
chr1 (25-120)||(13229032-13229131)
chr1 (20-120)||(40767823-40767927)
chr1 (38-116)||(12096080-12096159)
chr1 (40-120)||(32849698-32849780)
chr1 (211-280)||(46605845-46605914)
[»] chr7 (12 HSPs)
chr7 (17-278)||(20207746-20208003)
chr7 (211-348)||(20208387-20208524)
chr7 (44-120)||(19639753-19639830)
chr7 (26-120)||(41592960-41593055)
chr7 (20-120)||(38756862-38756966)
chr7 (26-120)||(38758082-38758178)
chr7 (211-267)||(5974245-5974301)
chr7 (163-347)||(38758191-38758376)
chr7 (26-120)||(41384356-41384451)
chr7 (40-120)||(37556301-37556383)
chr7 (44-116)||(5974354-5974427)
chr7 (44-120)||(5975440-5975517)
[»] chr3 (24 HSPs)
chr3 (26-255)||(34594321-34594549)
chr3 (40-280)||(33551650-33551893)
chr3 (102-280)||(34595590-34595769)
chr3 (26-186)||(27661259-27661421)
chr3 (42-279)||(32641146-32641386)
chr3 (348-483)||(41983565-41983688)
chr3 (45-151)||(27329020-27329127)
chr3 (170-279)||(26537482-26537592)
chr3 (38-142)||(26537590-26537695)
chr3 (26-173)||(27320432-27320580)
chr3 (26-120)||(27662376-27662471)
chr3 (26-127)||(1677172-1677274)
chr3 (40-120)||(39870651-39870732)
chr3 (357-480)||(9455592-9455716)
chr3 (33-115)||(26300752-26300841)
chr3 (43-120)||(31200720-31200798)
chr3 (26-113)||(27361399-27361487)
chr3 (72-120)||(3026684-3026733)
chr3 (44-120)||(13645049-13645126)
chr3 (72-120)||(39871948-39871997)
chr3 (288-349)||(55196572-55196633)
chr3 (44-120)||(3149460-3149539)
chr3 (26-113)||(27319669-27319757)
chr3 (320-356)||(32613874-32613910)
[»] chr4 (7 HSPs)
chr4 (42-270)||(4284143-4284372)
chr4 (129-270)||(4241507-4241647)
chr4 (20-120)||(34538328-34538432)
chr4 (45-120)||(11148548-11148625)
chr4 (44-125)||(2671733-2671815)
chr4 (26-127)||(20946050-20946152)
chr4 (235-347)||(34538126-34538238)
[»] scaffold0517 (2 HSPs)
scaffold0517 (39-142)||(6765-6870)
scaffold0517 (39-113)||(5602-5677)
[»] chr5 (3 HSPs)
chr5 (26-120)||(33489665-33489760)
chr5 (133-209)||(12890373-12890449)
chr5 (102-168)||(28592257-28592323)
[»] scaffold1176 (1 HSPs)
scaffold1176 (101-238)||(2160-2298)
[»] scaffold1118 (1 HSPs)
scaffold1118 (101-168)||(2592-2659)
[»] chr6 (2 HSPs)
chr6 (40-173)||(28050110-28050245)
chr6 (26-120)||(19580099-19580195)


Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 17 - 483
Target Start/End: Complemental strand, 44690350 - 44689884
Alignment:
Q  17 cagagagaggaaggtggaaatattggtttttaaatttcaaaattcgatgattacgttttttaatttcatcctatgtaaatatttgtttttggttttagtc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44690350 cagagagaggaaggtggaaatattggtttttaaatttcaaaattcgatgattacgttttttaatttcatcctatgtaaatatttgtttttggttttagtc 44690251  T
Q  117 cctcgaataacatcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagccagcacaacatttttt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44690250 cctcgaataacatcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagccagcacaacatttttt 44690151  T
Q  217 aacggaagatgacgttagggaccaattccaaaaagttaacaagatacaagggctgttttgcaacnnnnnnngatacatggactaaaagcaaaaatagtcc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||       |||||| ||| ||||||||||||||||||    
T  44690150 aacggaagatgacgttagggaccaattccaaaaagttaacaagatacaagggctgttttacaacaaaaaaagatacagggattaaaagcaaaaatagtcc 44690051  T
Q  317 aacttactaggaccttttacatatttaagccattatataactatttaatatttctaataattacctcaacaatatattttggccagattgatgtttcatc 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44690050 aacttactaggaccttttacatatttaagccattatataactatttaatatttctaataattacctcaacaatatattttggccggattgatgtttcatc 44689951  T
Q  417 agggatagaagaaattaatatttttcaaatgttgggacaaattacactgtcggggaaacatcttttt 483  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44689950 agggatagaagaaattaatatttttcaaatgttgggacaaattacactgtcggggaaacatcttttt 44689884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 348 - 483
Target Start/End: Complemental strand, 44680754 - 44680619
Alignment:
Q  348 attatataactatttaatatttctaataattacctcaacaatatattttggccagattgatgtttcatcagggatagaagaaattaatatttttcaaatg 447  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  44680754 attatataactatttaatattcctaataattacctcaacactatattttggccgcattgatgtttcatcaaggatagaagaaattaatatttttcaaatg 44680655  T
Q  448 ttgggacaaattacactgtcggggaaacatcttttt 483  Q
    ||||||||||||||||||||||||||||||||||||    
T  44680654 ttgggacaaattacactgtcggggaaacatcttttt 44680619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 26 - 173
Target Start/End: Original strand, 37964385 - 37964532
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaat 124  Q
    |||| ||||||  |||||||||||| |||||||||  |||  ||||||||| | |||||||| ||||||||| || |||||||||||||||||||  | |    
T  37964385 gaagatggaaagtttggtttttaaaattcaaaatttaatgtctacgttttt-attttcatccctatgtaaattttcgtttttggttttagtccctgtatt 37964483  T
Q  125 aacatcacttatcatctctcatgccacataagcatgttttgccaactca 173  Q
    ||||  |||||| |||||||||||||| | ||||  |||||||||||||    
T  37964484 aacactacttatgatctctcatgccacctcagcaacttttgccaactca 37964532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 39 - 173
Target Start/End: Complemental strand, 27410073 - 27409938
Alignment:
Q  39 ttggtttttaaatttcaaaattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataacatcacttatc 137  Q
    |||||||||||| |||||||||  |||  || ||| |||| |||||||| ||||||||| || ||||||||||| |||||||  | |||||  ||||||     
T  27410073 ttggtttttaaaattcaaaatttaatgtctatgttatttattttcatccctatgtaaattttcgtttttggtttaagtccctgtattaacactacttatg 27409974  T
Q  138 atctctcatgccacataagcatgttttgccaactca 173  Q
    |||||||||||||| | ||||  |||||||||||||    
T  27409973 atctctcatgccacctcagcaacttttgccaactca 27409938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 55 - 173
Target Start/End: Original strand, 27411005 - 27411124
Alignment:
Q  55 aaaattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcatctctcatgccacat 153  Q
    |||||| |||| ||| ||||||||||||||||| ||||||||| | ||||||| |||||||||| |  | |||||  ||||||||||||||||||||| |    
T  27411005 aaaatttgatgtttaggttttttaatttcatccctatgtaaatttgtgtttttagttttagtccttgtattaacactacttatcatctctcatgccactt 27411104  T
Q  154 aagcatgttttgccaactca 173  Q
     | ||  |||||||||||||    
T  27411105 catcaacttttgccaactca 27411124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 37963597 - 37963448
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgttttttaatttcatc-ctatgtaaatatttgtttttggttttagtccctcgaat 124  Q
    |||| ||||||  |||||||||||| ||||||||| | || ||| |||||||||||||||| || | ||||| | |||||||  ||||||||| |  | |    
T  37963597 gaagatggaaaatttggtttttaaaattcaaaatttgctgtttaggttttttaatttcatctctctataaatttgtgttttttattttagtccttgtatt 37963498  T
Q  125 aacatcacttatcatctctcatgccacataagcatgttttgccaactcaa 174  Q
    ||||  ||||||||| ||||||||||| | | ||  ||||||||||||||    
T  37963497 aacactacttatcatttctcatgccacctcatcaacttttgccaactcaa 37963448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 7274419 - 7274521
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgttttttaatttcat-cctatgtaaatatttgtttttggttttagtccctcgaat 124  Q
    ||||||||||||| |   ||||||| |||||| || |||||||| |||||||| |||||| ||||||||||| |   ||||||||||||||| ||| |||    
T  7274419 gaaggtggaaataataagttttaaaattcaaattttgatgattatgttttttattttcatccctatgtaaatttgcatttttggttttagtctctctaat 7274518  T
Q  125 aac 127  Q
    |||    
T  7274519 aac 7274521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 35919281 - 35919237
Alignment:
Q  42 gtttttaaatttcaaaattcgatgattacgttttttaatttcatc 86  Q
    |||||||||||| ||||||||||||||||||| ||||||| ||||    
T  35919281 gtttttaaattttaaaattcgatgattacgttgtttaattacatc 35919237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 45447142 - 45447074
Alignment:
Q  211 ttttttaacggaagatgacgttagggaccaattccaaaaagttaacaagatacaagggctgttttgcaa 279  Q
    |||||||||||| | |||||  |||||| |||| ||||||||||| || ||||||||| ||||| ||||    
T  45447142 ttttttaacggatggtgacggcagggacgaatttcaaaaagttaagaaaatacaagggttgtttcgcaa 45447074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 8e-90; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 26 - 268
Target Start/End: Original strand, 31559294 - 31559537
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaat 124  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| |  |||    
T  31559294 gaaggtggaaatattgatttttaaatttcaaaattcgatgattacgtgttttaatttcatccctatgtaaatattcgtttttggttttagtccttgtaat 31559393  T
Q  125 aacatcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagccagcacaacattttttaacggaag 224  Q
     ||| |||||||||||||||||||||||||| | ||||||||||||||| ||||||||| || |||||| ||||||||||||||| ||||||||||||||    
T  31559394 cacaacacttatcatctctcatgccacataaacgtgttttgccaactcatcaagtgacatgtgtgcctccgttagccagcacaactttttttaacggaag 31559493  T
Q  225 atgacgttagggaccaattccaaaaagttaacaagatacaaggg 268  Q
     |||||||||||||||||||||||||||||| ||||||||||||    
T  31559494 ttgacgttagggaccaattccaaaaagttaagaagatacaaggg 31559537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 72 - 280
Target Start/End: Original strand, 9262677 - 9262885
Alignment:
Q  72 ttttttaatttcatcctatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgccaact 171  Q
    ||||||||||||||||  || || | ||  ||||||||||||||||||| ||| | | |||||||||||||||| |||||||||   |||||||||||||    
T  9262677 ttttttaatttcatcccttgcaatttttcttttttggttttagtccctctaatcataacacttatcatctctcacgccacataactgtgttttgccaact 9262776  T
Q  172 caacaagtgacacgtatgcctctgttagccagcacaacattttttaacggaagatgacgttagggaccaattccaaaaagttaacaagatacaagggctg 271  Q
    ||  |||||||||||| | ||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||  ||    
T  9262777 cagtaagtgacacgtaagtctccgttagccagcacaactttttttaatggaagttgacgttagggaccaattccataaagataacaagatacaaggattg 9262876  T
Q  272 ttttgcaac 280  Q
    ||| |||||    
T  9262877 tttcgcaac 9262885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 102 - 274
Target Start/End: Complemental strand, 31558195 - 31558022
Alignment:
Q  102 tttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagcc 201  Q
    ||||||||||| ||||||| |||    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |  |||||| ||||||    
T  31558195 tttttggttttggtccctcaaatctagtcacttattatctctcatgccacataagcatgttttgccaactcaacaagtgacacatgcgcctctattagcc 31558096  T
Q  202 agcacaac-attttttaacggaagatgacgttagggaccaattccaaaaagttaacaagatacaagggctgttt 274  Q
    | || |||  ||||||||| |||| ||||||||||| |||||| |||||||||||||||||||||||| |||||    
T  31558095 aacaaaacttttttttaacagaagttgacgttaggggccaatttcaaaaagttaacaagatacaagggttgttt 31558022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 43517851 - 43517929
Alignment:
Q  43 tttttaaatttcaaaattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctc 120  Q
    |||||||| ||||||||| |||| |||| |||||||| ||||||| ||||| ||| || ||||||||||||||||||||    
T  43517851 tttttaaaattcaaaatttgatgtttactttttttaaattcatccctatgtcaattttcgtttttggttttagtccctc 43517929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 28165962 - 28165858
Alignment:
Q  20 agagaggaaggtggaaatattggtttttaaatttc-aaaattcgatgattacg-ttttttaatttca-tcc-tatgtaaatatttgtttttggttttagt 115  Q
    ||||||||||||||||| ||||| ||| ||||||| |||||| |||||||||| ||||||||||||| ||| |||||||| ||  | |||| ||||||||    
T  28165962 agagaggaaggtggaaagattgggtttaaaatttcaaaaatttgatgattacgtttttttaatttcagtccttatgtaaaaatgcgcttttcgttttagt 28165863  T
Q  116 ccctc 120  Q
    |||||    
T  28165862 ccctc 28165858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 258
Target Start/End: Complemental strand, 7317634 - 7317479
Alignment:
Q  104 tttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagccag 203  Q
    ||||||||||||| ||| ||| | |||| ||||||||| ||| |||||||||||||||||||  |  |||   |||||||||| |||||| ||| ||||     
T  7317634 tttggttttagtctctcaaatcatatcagttatcatctgtcaggccacataagcatgttttgttatgtcagtgagtgacacgtgtgcctccgtttgccaa 7317535  T
Q  204 cacaacattt-tttaacggaagatgacgttagggaccaattccaaaaagttaacaa 258  Q
    || | | ||| | |||| |||| | || |||||||||||  |||||||||||||||    
T  7317534 caaagcgtttatgtaacagaagttaacattagggaccaaaaccaaaaagttaacaa 7317479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 30547821 - 30547892
Alignment:
Q  44 ttttaaatttcaaaattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttag 114  Q
    |||||||||| |||||| |||||||| ||||||||||||| ||| |||||||||||   |||||||||||||    
T  30547821 ttttaaattttaaaatttgatgattatgttttttaatttcgtccttatgtaaatatacatttttggttttag 30547892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 40127537 - 40127442
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctc 120  Q
    |||| ||||||  ||| |||||||| || |||||| |||| |||| |||||||| ||||||| ||||| ||| || ||||||||||||||||||||    
T  40127537 gaagatggaaagtttgatttttaaaatttaaaatttgatgtttactttttttaaattcatccctatgtcaattttcgtttttggttttagtccctc 40127442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 5696137 - 5696238
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgttttttaatttcat-cctatgtaaatatttgtttttggttttagtccctcgaat 124  Q
    ||||||||||||| |   ||||||| |||||| || |||||||| |||||||| |||| | ||| ||||||| |  |||||||||||||||||||| |||    
T  5696137 gaaggtggaaataatatgttttaaaattcaaattttgatgattatgttttttattttcgtccctgtgtaaatttacgtttttggttttagtccctctaat 5696236  T
Q  125 aa 126  Q
    ||    
T  5696237 aa 5696238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 44904836 - 44904730
Alignment:
Q  20 agagaggaaggtggaaatattggtttttaaatttc-aaaattcgatgattacg---ttttttaatttca--tcctatgtaaatatttgtttttggtttta 113  Q
    ||||| ||||||||||| ||||| ||| ||||||| |||||| ||||||||||   |||||||||||||   |||||||||| || |||||||  |||||    
T  44904836 agagatgaaggtggaaagattgggtttaaaatttcaaaaatttgatgattacgtttttttttaatttcagtccctatgtaaaaatgtgtttttcatttta 44904737  T
Q  114 gtccctc 120  Q
    |||||||    
T  44904736 gtccctc 44904730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 164
Target Start/End: Complemental strand, 22053371 - 22053308
Alignment:
Q  101 gtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgtttt 164  Q
    |||||||||||| ||||||| ||| | |||||||||||| | ||| ||||||||||| ||||||    
T  22053371 gtttttggttttggtccctcaaatcatatcacttatcatttgtcaggccacataagcgtgtttt 22053308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 22060291 - 22060358
Alignment:
Q  101 gtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgcca 168  Q
    ||||||| |||| ||||||| ||| | |||||||||||| | ||| ||| ||||||||||||||||||    
T  22060291 gtttttgattttcgtccctcaaatcatatcacttatcatatgtcaggccccataagcatgttttgcca 22060358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 30546042 - 30545994
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgtttt 75  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||| |||||    
T  30546042 gaaggtggaaataatggtttt-aaatttcaaaatttgatgattatgtttt 30545994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 44905952 - 44906028
Alignment:
Q  44 ttttaaatttcaaaattcgatgattacgtttttt-aatttcatcc-tatgtaaatatttgtttttggttttagtccc 118  Q
    ||||||||| ||||||| |||||||| ||||||| |||||| ||| |||||||| ||   |||||||||||||||||    
T  44905952 ttttaaattccaaaatttgatgattatgtttttttaatttcgtccctatgtaaaaatgcatttttggttttagtccc 44906028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 2e-72; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 26 - 347
Target Start/End: Original strand, 9419557 - 9419877
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaat 124  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| |||    
T  9419557 gaaggtggaaagattggtttttaaatttcaaaatttgatgattacgttttttaatttcatccctatgtaaatattcgtttttggttttattccctctaat 9419656  T
Q  125 aacatcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagccagcacaacat-tttttaacggaa 223  Q
     ||| |||||||||| | ||||||||||||||| |||||||||||||||  |||||||| || |||||  ||||||| ||||||| | ||||||||||||    
T  9419657 cacaacacttatcatatttcatgccacataagcgtgttttgccaactcagaaagtgacatgtgtgccttcgttagccggcacaacttatttttaacggaa 9419756  T
Q  224 gatgacgttagggaccaattccaaaaagttaacaagatacaagggctgttttgcaacnnnnnnngatacatggactaaaagcaaaaatagtccaacttac 323  Q
    | | | ||| |||||||||| | ||||||||||||||| |||||| ||||| || |         ||||  |||||||||||||||| |  |||||||||    
T  9419757 gttaatgtttgggaccaatttctaaaagttaacaagatccaagggttgtttcgcca---aaaaaaatactcggactaaaagcaaaaacacgccaacttac 9419853  T
Q  324 taggaccttttacatatttaagcc 347  Q
     |||||||||||||||||||||||    
T  9419854 aaggaccttttacatatttaagcc 9419877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 43 - 347
Target Start/End: Complemental strand, 28361078 - 28360769
Alignment:
Q  43 tttttaaatttcaaaattcgatgattacgtttttt-aatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcatc 140  Q
    ||||||| ||| ||| || |||| ||||||||||| |||||||||| ||||||| | | |||||||| |||| || |||| |||    ||||||||||||    
T  28361078 tttttaatttttaaattttgatgtttacgttttttcaatttcatccctatgtaattttgtgtttttgattttggttcctcaaatctagtcacttatcatc 28360979  T
Q  141 tctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagccagcacaacatttttt----aacggaagatgacgttaggg 236  Q
    || |||||||||||||  ||||| ||| ||| | |||||||||||  |||||| ||| | ||||||| | ||||||    ||| |||  |||||||||||    
T  28360978 tcgcatgccacataagtgtgttt-gcctacttagcaagtgacacgggtgcctccgtttgtcagcacatctttttttttttaactgaacctgacgttaggg 28360880  T
Q  237 accaattccaaaaagttaacaagatacaagggctgttttgcaacnnnnnnngatacatggactaaaagcaaaaatagtccaacttactaggaccttttac 336  Q
    | ||||||||||||||||| |||||||||| | ||||| |||||       |||||| ||||||||| ||||| |   ||||||||| ||||||||| ||    
T  28360879 aacaattccaaaaagttaagaagatacaagagttgtttcgcaacaaaaaaagatacaaggactaaaaccaaaagtgcgccaacttacaaggacctttaac 28360780  T
Q  337 atatttaagcc 347  Q
    |||||||||||    
T  28360779 atatttaagcc 28360769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 26 - 150
Target Start/End: Complemental strand, 27524591 - 27524466
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaat 124  Q
    |||| ||||||  |||||||||||| ||||||||| |||| |||||||||| |||||||||| ||||||||| | ||||||||||||||||||||  | |    
T  27524591 gaagatggaaagtttggtttttaaaattcaaaatttgatgtttacgtttttaaatttcatccctatgtaaatttgtgtttttggttttagtccctgtact 27524492  T
Q  125 aacatcacttatcatctctcatgcca 150  Q
    ||||  ||||||||||||||||||||    
T  27524491 aacactacttatcatctctcatgcca 27524466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 39 - 173
Target Start/End: Original strand, 28253383 - 28253519
Alignment:
Q  39 ttggtttttaaatttcaaaattcgatgattacgtttttt-aatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataacatcacttat 136  Q
    |||||||||||| ||||||||| |||| |||| |||||| |||||||||| ||||||||| |  ||||||| |||||||||||| | |||||  ||||||    
T  28253383 ttggtttttaaaattcaaaatttgatgtttacctttttttaatttcatccctatgtaaatttacgtttttgattttagtccctctactaacactacttat 28253482  T
Q  137 catctctcatgccacataagcatgttttgccaactca 173  Q
    ||||||||||||||  | ||||  |||||||||||||    
T  28253483 catctctcatgccatctcagcaaattttgccaactca 28253519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 37401311 - 37401206
Alignment:
Q  39 ttggtttttaaatttcaaaattcgatgattacgttttttaatttcatcc-tatgtaaatatttgttttt-ggttttagtccctcgaataacatcacttat 136  Q
    ||||||||||||  |||||||| |||| |||| |||||||| ||||||| ||||||||| | ||||||| |||||||||||||  | |||||| ||||||    
T  37401311 ttggtttttaaaaatcaaaatttgatgtttaccttttttaacttcatccctatgtaaatttgtgttttttggttttagtccctgtactaacattacttat 37401212  T
Q  137 catctc 142  Q
    ||||||    
T  37401211 catctc 37401206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 43882345 - 43882243
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgttttttaatttcatc-ctatgtaaatatttgtttttggttttagtccctcgaat 124  Q
    ||||||||||||| |   ||||||| |||||| || |||||||| |||||||| || | || |||||||||| || |||||||||||||||||||| |||    
T  43882345 gaaggtggaaataatatgttttaaaattcaaattttgatgattatgttttttatttccgtctctatgtaaattttcgtttttggttttagtccctctaat 43882246  T
Q  125 aac 127  Q
    |||    
T  43882245 aac 43882243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 37402399 - 37402474
Alignment:
Q  39 ttggtttttaaatttcaaaattcgatgattacgttttttaatttcat-cctatgtaaatatttgtttttggtttta 113  Q
    |||||||||||| ||||||||| |||  ||||||||||||||||||| ||||||||||| |   ||||||||||||    
T  37402399 ttggtttttaaaattcaaaatttgatttttacgttttttaatttcatccctatgtaaatttgcatttttggtttta 37402474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 120
Target Start/End: Original strand, 12097709 - 12097791
Alignment:
Q  39 ttggtttttaaatttcaaaattcgatgattacgttttttaatttcat-cctatgtaaatatttgtttttggttttagtccctc 120  Q
    |||||||||||| ||||||| | ||| |||| ||||||||||||||| ||||  |||| ||  ||||||||||||||||||||    
T  12097709 ttggtttttaaaattcaaaaattgataattaagttttttaatttcatccctacctaaaaatgcgtttttggttttagtccctc 12097791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 13223193 - 13223115
Alignment:
Q  44 ttttaaatttcaaaattcgatgattacgtttttt-aatttcatcc-tatgtaaatatttgtttttggttttagtccctc 120  Q
    ||||||||| ||||||| |||||||| ||||||| |||||| ||| |||||||| ||  ||||||||||||||||||||    
T  13223193 ttttaaattccaaaatttgatgattatgtttttttaatttcgtccctatgtaaaaatgcgtttttggttttagtccctc 13223115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 35381663 - 35381586
Alignment:
Q  40 tggtttttaaatttcaaaattcgatgattacgttttttaatttcat-cctatgtaaatatttgtttttggttttagtc 116  Q
    ||||||||||| ||||||| | ||||||||| |||||||||| ||| |||||||||| ||  ||||||| ||||||||    
T  35381663 tggtttttaaaattcaaaaattgatgattacattttttaattacatccctatgtaaaaatacgtttttgcttttagtc 35381586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 13229032 - 13229131
Alignment:
Q  25 ggaaggtggaaatattggtttttaaatttcaaaat-tcgatgattacgtttttt-aatttcat--cctatgtaaatatttgtttttggttttagtccctc 120  Q
    |||||||||||| ||||| ||| |||||||||||  | |||||||||||||||| ||||| |   |||||||||| || ||||||| |||||||||||||    
T  13229032 ggaaggtggaaagattgggtttaaaatttcaaaaaattgatgattacgtttttttaattttagtccctatgtaaaaatgtgtttttcgttttagtccctc 13229131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 40767927 - 40767823
Alignment:
Q  20 agagaggaaggtggaaatattggtttttaaatttc-aaaattcgatgattacg-ttttttaatttca-tcc-tatgtaaatatttgtttttggttttagt 115  Q
    ||||||||||||||||| ||||| ||| || |||| |||||| |||||||||| ||||||| ||||| ||| |||||||| ||  |||||| ||||||||    
T  40767927 agagaggaaggtggaaaaattgggtttaaattttcaaaaatttgatgattacgtttttttagtttcagtccttatgtaaaaatgcgtttttcgttttagt 40767828  T
Q  116 ccctc 120  Q
    |||||    
T  40767827 ccctc 40767823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 12096159 - 12096080
Alignment:
Q  38 attggtttttaaatttcaaaattcgatgattacgttttttaatttcat-cctatgtaaatatttgtttttggttttagtc 116  Q
    ||||||||||||| ||||||| | ||| |||| ||||||||||||||| ||  |||||| ||  ||||||||||||||||    
T  12096159 attggtttttaaaattcaaaaattgataattaagttttttaatttcatccccgtgtaaaaatgcgtttttggttttagtc 12096080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 32849698 - 32849780
Alignment:
Q  40 tggtttttaaatttcaaaattcgatgattacg-ttttttaatttcat-cctatgtaaatatttgtttttggttttagtccctc 120  Q
    ||||||||||| ||||||| | |||| ||||| |||||||||| ||| ||| |||||| ||  ||||||||||||||||||||    
T  32849698 tggtttttaaaattcaaaaattgatgtttacgtttttttaattacatccctgtgtaaaaatacgtttttggttttagtccctc 32849780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 46605845 - 46605914
Alignment:
Q  211 ttttttaacggaagatgacgttagggaccaattccaaaaagttaacaagatacaagggctgttttgcaac 280  Q
    |||||||||||| | |||||  |||||| |||| ||||||||||| || ||||||||| ||||| |||||    
T  46605845 ttttttaacggatggtgacggcagggacgaatttcaaaaagttaagaaaatacaagggttgtttcgcaac 46605914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 9e-62; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 20208003 - 20207746
Alignment:
Q  17 cagagagaggaaggtggaaatattggtttttaaatttcaaaattcgatgattacgttttttaatttcatccta-tgtaaatatttgtttttggttttagt 115  Q
    |||||||| |||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||| | ||||||       | |||||||||||    
T  20208003 cagagagatgaaggtggaaatattgatttttaaatttcaaaattagatgattacattttttaatttcatcccactgtaaaa------tgttggttttagt 20207910  T
Q  116 ccctcgaataacatcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagccagcacaacat-ttt 214  Q
    ||||| ||| |||  |||||||||| ||||||| |||||||| ||||||||||||||| |||||||||||| ||  || ||||||||||||||| | |||    
T  20207909 ccctctaatcacaatacttatcatcgctcatgcgacataagcgtgttttgccaactcagcaagtgacacgtttgtttccgttagccagcacaacttattt 20207810  T
Q  215 ttaacggaagatgacgttagggaccaattccaaaaagttaacaagatacaagggctgttttgca 278  Q
    |||||||||| ||||||||||||||||||  ||||||||||||||||| |||||  ||||||||    
T  20207809 ttaacggaagttgacgttagggaccaattttaaaaagttaacaagatataagggtcgttttgca 20207746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 211 - 348
Target Start/End: Original strand, 20208387 - 20208524
Alignment:
Q  211 ttttttaacggaagatgacgttagggaccaattccaaaaagttaacaagatacaagggctgttttgcaacnnnnnnngatacatggactaaaagcaaaaa 310  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| ||||| |||||       |||| | ||||||||||||||||    
T  20208387 ttttttaacggaagttgacgttagggaccaattccaaaaatttaacatgatacaagggttgtttcgcaactaaaaaagatagagggactaaaagcaaaaa 20208486  T
Q  311 tagtccaacttactaggaccttttacatatttaagcca 348  Q
     |  |||||||||  ||| |||||||||||||||||||    
T  20208487 cacaccaacttacagggatcttttacatatttaagcca 20208524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 19639753 - 19639830
Alignment:
Q  44 ttttaaatttcaaaattcgatgattacgttttttaatttcat-cctatgtaaatatttgtttttggttttagtccctc 120  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||  |||||| |||||| ||||||    
T  19639753 ttttaaatttcaaaatttgatgattacgttttttaatttcatccctatgtaaacatgcgttttttgttttaatccctc 19639830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 41592960 - 41593055
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgttttttaatttcat-cctatgtaaatatttgtttttggttttagtccctc 120  Q
    |||| ||||||  ||| |||||||| ||||||||| |||| |||| |||||||||||||| ||||||| ||| || ||||||||||||||||||||    
T  41592960 gaagatggaaagtttgatttttaaaattcaaaatttgatgtttactttttttaatttcatccctatgtcaattttcgtttttggttttagtccctc 41593055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 38756966 - 38756862
Alignment:
Q  20 agagaggaaggtggaaatattggtttttaaatttc-aaaattcgatgattacg-ttttttaatttca--tcctatgtaaatatttgtttttggttttagt 115  Q
    ||||||||||||||||| ||||| ||| ||||||| |||||| |||||||||| ||||||||||| |   |||||||||| || ||||||| ||||||||    
T  38756966 agagaggaaggtggaaagattggatttaaaatttcaaaaatttgatgattacgtttttttaattttagtccctatgtaaaaatgtgtttttcgttttagt 38756867  T
Q  116 ccctc 120  Q
    |||||    
T  38756866 ccctc 38756862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 38758082 - 38758178
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgtttttt-aatttcatcc-tatgtaaatatttgtttttggttttagtccctc 120  Q
    ||||||||||| | ||  ||||||||| ||||||| |||||||| ||||||| |||||| ||| |||||||| || |||||||||||||||||||||    
T  38758082 gaaggtggaaagaatgaattttaaattccaaaatttgatgattatgtttttttaatttcgtccctatgtaaaaatgtgtttttggttttagtccctc 38758178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 5974301 - 5974245
Alignment:
Q  211 ttttttaacggaagatgacgttagggaccaattccaaaaagttaacaagatacaagg 267  Q
    |||| ||||||||| ||| |||| ||||||||| ||||||||||| |||||||||||    
T  5974301 ttttgtaacggaagttgatgttatggaccaatttcaaaaagttaagaagatacaagg 5974245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 347
Target Start/End: Original strand, 38758191 - 38758376
Alignment:
Q  163 ttgccaactcaacaagtgacacgtatgcctctgttagccagcacaacatttttta-acggaagatgacgttagggaccaattccaaaaagttaacaagat 261  Q
    ||||||| ||| || ||| ||||||||| ||||||||||| ||   ||||||||  ||||||   |||| |||||||||||| ||||| |||||  | ||    
T  38758191 ttgccaattcatcatgtgccacgtatgcgtctgttagccaacaatgcatttttttgacggaaatagacggtagggaccaatttcaaaaggttaagtaaat 38758290  T
Q  262 acaagggctgttttgcaacnnnnnnngatacatggactaaaagcaaaaatagtccaacttactaggaccttttacatatttaagcc 347  Q
    ||||||| ||||| |||||       |||||| ||||||||| ||||||    | |||||||  ||||||||||| ||||||||||    
T  38758291 acaagggttgtttcgcaacaaaaaaagatacagggactaaaaccaaaaacgcgctaacttacagggaccttttacttatttaagcc 38758376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 41384451 - 41384356
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctc 120  Q
    |||| ||||||  ||| |||||||| |||| |||| |||| |||  |||||||| ||||||| ||||| ||| || ||||||||||||||||||||    
T  41384451 gaagatggaaagtttgatttttaaaattcagaatttgatgtttattttttttaaattcatccctatgtcaattttcgtttttggttttagtccctc 41384356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 120
Target Start/End: Original strand, 37556301 - 37556383
Alignment:
Q  40 tggtttttaaatttcaaaattcgatgattacg-ttttttaatttcat-cctatgtaaatatttgtttttggttttagtccctc 120  Q
    ||||||||||| ||||||| | |||| ||||| |||||||||| ||| ||| |||||| ||  ||||||||||||||||||||    
T  37556301 tggtttttaaaattcaaaaattgatgtttacgtttttttaattacatccctgtgtaaaaatacgtttttggttttagtccctc 37556383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 5974427 - 5974354
Alignment:
Q  44 ttttaaatttcaaaattcgatgattacgttttttaatttcat-cctatgtaaatatttgtttttggttttagtc 116  Q
    |||||||||||||| || |||||||| |||||||||||| || ||| ||||||| | |||||||  ||||||||    
T  5974427 ttttaaatttcaaactttgatgattatgttttttaattttatccctgtgtaaatttgtgttttttattttagtc 5974354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 5975440 - 5975517
Alignment:
Q  44 ttttaaatttcaaaattcgatgattacgttttttaatttcat-cctatgtaaatatttgtttttggttttagtccctc 120  Q
    |||||||||| ||| || |||||||| ||||||||||||| | ||||||||||| |   ||||| |||||||||||||    
T  5975440 ttttaaattttaaattttgatgattatgttttttaatttcgtccctatgtaaatttgcattttttgttttagtccctc 5975517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 26 - 255
Target Start/End: Complemental strand, 34594549 - 34594321
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaat 124  Q
    |||| |||||| ||||||||||||   ||||||||| ||||||| ||||||||||||||||| ||||||||| |  |||||||||||||||||||| |||    
T  34594549 gaagatggaaagattggtttttaa---tcaaaattcaatgattatgttttttaatttcatccctatgtaaatttccgtttttggttttagtccctctaat 34594453  T
Q  125 aacatcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagccagcacaac-attttttaacggaa 223  Q
     ||| || ||||| ||||||||| ||| ||||| | | ||| ||||| ||||||||||| || |||||||||||| || ||||||  |||||||||||||    
T  34594452 cacaacaattatcgtctctcatgtcacgtaagcgtatcttgacaacttaacaagtgacatgtgtgcctctgttagacaacacaacttttttttaacggaa 34594353  T
Q  224 gatgacgttagggaccaattccaaaaagttaa 255  Q
    ||| ||||||||||||||||||||||||||||    
T  34594352 gattacgttagggaccaattccaaaaagttaa 34594321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 40 - 280
Target Start/End: Complemental strand, 33551893 - 33551650
Alignment:
Q  40 tggtttttaaatttcaaaattcgatgattacgttttt-taatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataacatcacttatc 137  Q
    |||||||| ||||||||| || |||| |||||||||| || |||||||| | || || | | |||||||||||||  ||| || |||    |||||||||    
T  33551893 tggttttttaatttcaaattttgatgtttacgtttttctagtttcatccctgtgcaattttgtgtttttggttttgatccttcaaatctagtcacttatc 33551794  T
Q  138 atctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagccagcacaacattttttaa-cggaagatgacgttaggg 236  Q
    |||||||||||||||||||| ||||||||| ||||| ||||||||| || |||||| |||| |||||||||| |||||||| |||||  |||||||||||    
T  33551793 atctctcatgccacataagcgtgttttgccgactcagcaagtgacatgtgtgcctccgttaaccagcacaactttttttaagcggaacctgacgttaggg 33551694  T
Q  237 accaattccaaaaagttaacaagatacaagggctgttttgcaac 280  Q
    | ||||||||||||||||| |||||||||||||||||| |||||    
T  33551693 atcaattccaaaaagttaagaagatacaagggctgtttcgcaac 33551650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 102 - 280
Target Start/End: Original strand, 34595590 - 34595769
Alignment:
Q  102 tttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagcc 201  Q
    ||||||||||||||||||| ||| ||| |||||| ||||| ||||||||||||||| ||||||||||||||| ||||||| | |  ||||||||||||||    
T  34595590 tttttggttttagtccctctaatcacaacacttaccatctttcatgccacataagcgtgttttgccaactcagcaagtgatatgcgtgcctctgttagcc 34595689  T
Q  202 agcacaacat-tttttaacggaagatgacgttagggaccaattccaaaaagttaacaagatacaagggctgttttgcaac 280  Q
    | |||| ||| ||||||||| ||| ||| |||||||||||||| ||||| |||||||||||||||||| ||||| |||||    
T  34595690 atcacaccatctttttaacgaaagttgatgttagggaccaatttcaaaaggttaacaagatacaagggttgtttcgcaac 34595769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 26 - 186
Target Start/End: Complemental strand, 27661421 - 27661259
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgttt-tttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaa 123  Q
    |||||||||||| |||  |||||||||||||||||  |||||||| ||| |||||||||| || ||||||||||| |||| || ||||||||||||| |     
T  27661421 gaaggtggaaattttgagttttaaatttcaaaattttatgattacatttctttaatttcacccctatgtaaatatgtgttatttgttttagtccctctac 27661322  T
Q  124 taacatcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgt 186  Q
    ||||| || || |||||||||||||||||||||| |||||| ||| |||| ||| || |||||    
T  27661321 taacaccagttgtcatctctcatgccacataagcgtgtttttccatctcatcaattgtcacgt 27661259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 42 - 279
Target Start/End: Complemental strand, 32641386 - 32641146
Alignment:
Q  42 gtttttaaatttcaaaattcgatgattacgtttttt-aatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcat 139  Q
    |||||||||||| ||| || |||| ||||||||||| |||||||||| | || || | |  ||||||| |||| ||||||| |||   ||||||||| ||    
T  32641386 gtttttaaattttaaattttgatgtttacgttttttcaatttcatccctctgcaattttgcgtttttgattttggtccctcaaatctaatcacttattat 32641287  T
Q  140 ctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagccagcacaac-attttttaacggaagatgacgttagggac 238  Q
    || ||||||||||||| | ||||||| || ||||||||||| || || ||||||||||||| ||||||||  |||||||||| ||  | || ||| ||||    
T  32641286 ctttcatgccacataaacgtgttttgtcagctcaacaagtggcatgtgtgcctctgttagctagcacaacttttttttaacgaaacctaacattaaggac 32641187  T
Q  239 caattccaaaaagttaacaagatacaagggctgttttgcaa 279  Q
    ||||||||||| ||||| |||||| | ||| ||||| ||||    
T  32641186 caattccaaaatgttaagaagatataggggttgtttcgcaa 32641146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 348 - 483
Target Start/End: Original strand, 41983565 - 41983688
Alignment:
Q  348 attatataactatttaatatttctaataattacctcaacaatatattttggccagattgatgtttcatcagggatagaagaaattaatatttttcaaatg 447  Q
    ||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||||| |||||||             |||||||||||||||||||||    
T  41983565 attatatgactatttaagattcctaataattacatcaacaatatattttggccagattaatgtttc------------tgaaattaatatttttcaaatg 41983652  T
Q  448 ttgggacaaattacactgtcggggaaacatcttttt 483  Q
    |||||||||| |||||||| ||||||| ||||||||    
T  41983653 ttgggacaaactacactgttggggaaatatcttttt 41983688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 27329127 - 27329020
Alignment:
Q  45 tttaaatttcaaaattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcatctct 143  Q
    |||||| ||||||||| |||| ||| ||||||||||||||||| ||||||||| | |||||||||||||||||| |  | |||||  |||||||||||||    
T  27329127 tttaaaattcaaaatttgatgtttaggttttttaatttcatccctatgtaaatttgtgtttttggttttagtccttgtattaacactacttatcatctct 27329028  T
Q  144 catgccac 151  Q
    ||||||||    
T  27329027 catgccac 27329020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 170 - 279
Target Start/End: Complemental strand, 26537592 - 26537482
Alignment:
Q  170 ctcaacaagtgacacgtatgcctctgttagccagcacaacatttttt-aacggaagatgacgttagggaccaattccaaaaagttaacaagatacaaggg 268  Q
    |||| ||||||||| || |||||| ||| |||| || ||| |||||| || ||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  26537592 ctcatcaagtgacatgtgtgcctccgttggccatcaaaacttttttttaatggaagttgacgttagggaccaattccaaaaagttaagaagatacaaggg 26537493  T
Q  269 ctgttttgcaa 279  Q
     ||||| ||||    
T  26537492 ttgtttcgcaa 26537482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 26537695 - 26537590
Alignment:
Q  38 attggtttttaaatttcaaaattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataacatcacttat 136  Q
    ||||| |||||||||  |||||| |||||||||||||||||||||||||| ||| ||||||| |||||||| |||||||||||| | ||||| || || |    
T  26537695 attgggttttaaattgtaaaatttgatgattacgttttttaatttcatccttatttaaatatgtgtttttgattttagtccctctactaacaccaattgt 26537596  T
Q  137 catctc 142  Q
    ||||||    
T  26537595 catctc 26537590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 26 - 173
Target Start/End: Original strand, 27320432 - 27320580
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaat 124  Q
    |||| ||||||  |||||||||||| |||||||||  |||  ||||||||||| |||||||| ||||||||| || ||||||| |||||||||||  | |    
T  27320432 gaagatggaaagtttggtttttaaaattcaaaatttaatgtctacgttttttattttcatccctatgtaaattttcgtttttgattttagtccctgtatt 27320531  T
Q  125 aacatcacttatcatctctcatgccacataagcatgttttgccaactca 173  Q
    ||||  |||||| |||||||||||||| | | ||  |||||||||||||    
T  27320532 aacactacttatgatctctcatgccacctcaacaacttttgccaactca 27320580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 27662376 - 27662471
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgtttt-ttaatttcatcctatgtaaatatttgtttttggttttagtccctc 120  Q
    |||||||||||||  || ||||||||||||||||| ||| |||| ||||| |||||||| |||| |||||||||  |||||| |||||||||||||    
T  27662376 gaaggtggaaataaaggattttaaatttcaaaatttgataattatgtttttttaatttcgtcctctgtaaatatgcgtttttagttttagtccctc 27662471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 1677274 - 1677172
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaat 124  Q
    ||||||||||||| |   ||||||| |||||| || ||||||||||||||||| |||| ||| ||||||||| |  |||||||||||||||||||| |||    
T  1677274 gaaggtggaaataatatgttttaaaattcaaattttgatgattacgttttttattttcgtccctatgtaaatttgcgtttttggttttagtccctctaat 1677175  T
Q  125 aac 127  Q
    |||    
T  1677174 aac 1677172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 39870732 - 39870651
Alignment:
Q  40 tggtttttaaatttcaaaattcgatgattacgttttttaatttcat-cctatgtaaatatttgtttttggttttagtccctc 120  Q
    ||||||||||| ||||||| | |||||||||||||||||||| ||| |||||||||| ||  ||||||| ||||||||||||    
T  39870732 tggtttttaaaattcaaaaattgatgattacgttttttaattacatccctatgtaaaaatacgtttttgattttagtccctc 39870651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 357 - 480
Target Start/End: Original strand, 9455592 - 9455716
Alignment:
Q  357 ctatttaatatttctaataattacctcaacaatatattttggccagattgatgtttcatcagggatag-aagaaattaatatttttcaaatgttgggaca 455  Q
    |||||||  ||| |||| ||| |||||| ||||||||| |||||||||| |||||||  |||   | | |||||| ||||||||||||||||||||||||    
T  9455592 ctatttatgattcctaaaaatgacctcatcaatatattctggccagatttatgtttctgcagatgtggcaagaaaataatatttttcaaatgttgggaca 9455691  T
Q  456 aattacactgtcggggaaacatctt 480  Q
    ||||||| ||| || ||| ||||||    
T  9455692 aattacattgttggagaagcatctt 9455716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 26300841 - 26300752
Alignment:
Q  33 gaaatattggtttttaaatttcaaaattcgatgattacgtttttt------aatttcatcc-tatgtaaatatttgtttttggttttagt 115  Q
    |||| ||||||||| |||||||||||||| ||| |||||||||||      |||||||||| |||| |||||||||||||||||||||||    
T  26300841 gaaagattggttttaaaatttcaaaattcaatgtttacgtttttttttttcaatttcatccctatgcaaatatttgtttttggttttagt 26300752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 31200720 - 31200798
Alignment:
Q  43 tttttaaatttcaaaattcgatgattacgttttttaatttcat-cctatgtaaatatttgtttttggttttagtccctc 120  Q
    |||||||| ||||||||| |||| |||| ||||| || ||||| ||||||| ||| |||||||||||||||||||||||    
T  31200720 tttttaaaattcaaaatttgatgtttacttttttaaaattcatgcctatgtcaatttttgtttttggttttagtccctc 31200798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 27361487 - 27361399
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgttttttaatttcat-cctatgtaaatatttgtttttggtttta 113  Q
    |||| ||||||  ||| |||||||| ||||||||| |||  ||| ||||||||||||||| ||||||||||| | ||||||||||||||    
T  27361487 gaagatggaaaatttgatttttaaaattcaaaatttgatatttaggttttttaatttcatccctatgtaaatttgtgtttttggtttta 27361399  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 3026684 - 3026733
Alignment:
Q  72 ttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctc 120  Q
    |||||||||| ||||| |||||||| || |||||||||||||||||||||    
T  3026684 ttttttaattacatccctatgtaaaaatatgtttttggttttagtccctc 3026733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 13645126 - 13645049
Alignment:
Q  44 ttttaaatttcaaaattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctc 120  Q
    ||||| |||||||| || ||| |||| |||||||| |||| ||| ||||||||| |  ||||||||||||||||||||    
T  13645126 ttttacatttcaaattttgattattatgttttttattttcgtccctatgtaaatttgcgtttttggttttagtccctc 13645049  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 39871948 - 39871997
Alignment:
Q  72 ttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctc 120  Q
    |||||||||| ||||| |||||||| || |||||||||||||||||||||    
T  39871948 ttttttaattacatccctatgtaaaaatatgtttttggttttagtccctc 39871997  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 349
Target Start/End: Complemental strand, 55196633 - 55196572
Alignment:
Q  288 gatacatggactaaaagcaaaaatagtccaacttactaggaccttttacatatttaagccat 349  Q
    |||||||||||||||| |||||||   | ||||||| |||||||||| | ||||||||||||    
T  55196633 gatacatggactaaaaccaaaaatgcgcgaacttacaaggacctttttcttatttaagccat 55196572  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 44 - 120
Target Start/End: Complemental strand, 3149539 - 3149460
Alignment:
Q  44 ttttaaatttcaaaattcgatgattacgtttttt--aatttcatcc-tatgtaaatatttgtttttggttttagtccctc 120  Q
    ||||||||| ||||||| |||||||| |||||||  |||||| ||| |||||||| ||  || |||||||||||||||||    
T  3149539 ttttaaattccaaaatttgatgattatgttttttttaatttcgtccctatgtaaaaatgcgtctttggttttagtccctc 3149460  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 27319757 - 27319669
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgttttttaatttc-atcctatgtaaatatttgtttttggtttta 113  Q
    |||| ||||||  ||| |||||||| ||||||||| |||  ||| ||||||||||||| | ||||||||||| | |||| |||||||||    
T  27319757 gaagatggaaaatttgatttttaaaattcaaaatttgatatttaggttttttaatttcaaccctatgtaaatttgtgttcttggtttta 27319669  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 356
Target Start/End: Complemental strand, 32613910 - 32613874
Alignment:
Q  320 ttactaggaccttttacatatttaagccattatataa 356  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  32613910 ttacaaggaccttttacatatttaagccattaaataa 32613874  T

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Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 42 - 270
Target Start/End: Original strand, 4284143 - 4284372
Alignment:
Q  42 gtttttaaatttcaaaattcgatgattacgtttttt-aatttca-tcctatgtaaatatttgtttttggttttagtccctcgaataacatcacttatcat 139  Q
    |||||||||||||||| |  |||| ||||||||||| ||||||| |||| || || | |  |||||||||||| ||||||| |||    |||||||||||    
T  4284143 gtttttaaatttcaaattatgatgtttacgttttttcaatttcactcctctgcaattttgcgtttttggttttggtccctcaaatctagtcacttatcat 4284242  T
Q  140 ctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagccagcacaacattttttaacggaagatgacgttagggacc 239  Q
    || |||||| |||||||  |  |||||||||||| |||||||||| | ||||||||||||||| |||||  |||||||||||||  ||| ||||||||||    
T  4284243 ctttcatgc-acataagtgtactttgccaactcagcaagtgacacatgtgcctctgttagccaacacaattttttttaacggaacctgatgttagggacc 4284341  T
Q  240 aattccaaaaagttaacaagatacaagggct 270  Q
    |||||||||||||||| |||||| |||||||    
T  4284342 aattccaaaaagttaagaagatataagggct 4284372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 129 - 270
Target Start/End: Original strand, 4241507 - 4241647
Alignment:
Q  129 tcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagccagcacaacattttttaacggaagatga 228  Q
    ||||||||||||| |||||| ||||| |  || |||||||||||| |||||||||| | ||||||||||||||| |||||  ||||||||| |||  |||    
T  4241507 tcacttatcatctttcatgc-acataggtgtgctttgccaactcagcaagtgacacatgtgcctctgttagccaacacaattttttttaacagaacctga 4241605  T
Q  229 cgttagggaccaattccaaaaagttaacaagatacaagggct 270  Q
    | |||||||||||||||||||| |||| |||||| |||||||    
T  4241606 cattagggaccaattccaaaaatttaagaagatataagggct 4241647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 34538432 - 34538328
Alignment:
Q  20 agagaggaaggtggaaatattggtttttaaatttc-aaaattcgatgattacg-ttttttaatttca--tcctatgtaaatatttgtttttggttttagt 115  Q
    ||||||||||||||||| ||||| ||| ||||||| |||||| |||||||||| |||||||||||||   |||||||||| ||  |||||| ||||||||    
T  34538432 agagaggaaggtggaaagattgggtttaaaatttcaaaaatttgatgattacgtttttttaatttcagtccctatgtaaaaatgcgtttttcgttttagt 34538333  T
Q  116 ccctc 120  Q
    |||||    
T  34538332 ccctc 34538328  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 11148625 - 11148548
Alignment:
Q  45 tttaaatttcaaaattcgatgattacgtttttt-aatttcatcc-tatgtaaatatttgtttttggttttagtccctc 120  Q
    |||||||| ||||||| |||||||| ||||||| |||||| ||| |||||||| || |||||||||||||||||||||    
T  11148625 tttaaattccaaaatttgatgattatgtttttttaatttcgtccctatgtaaaaatgtgtttttggttttagtccctc 11148548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 2671815 - 2671733
Alignment:
Q  44 ttttaaatttcaaaattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaata 125  Q
    ||||||| |||||| || |||||||| |||||||| |||| ||| ||||||||| |  |||||||||||||||||||| ||||    
T  2671815 ttttaaaattcaaattttgatgattatgttttttattttcgtccctatgtaaatttgcgtttttggttttagtccctctaata 2671733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 20946152 - 20946050
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgttttttaatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaat 124  Q
    ||||||||||||| |   ||||||| |||||| || ||||||||  ||||||| |||| ||| | ||||||| | ||||||||||||||||||||| |||    
T  20946152 gaaggtggaaataatatgttttaaaattcaaattttgatgattatattttttattttcgtccctgtgtaaatttgtgtttttggttttagtccctctaat 20946053  T
Q  125 aac 127  Q
    |||    
T  20946052 aac 20946050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 347
Target Start/End: Complemental strand, 34538238 - 34538126
Alignment:
Q  235 ggaccaattccaaaaagttaacaagatacaagggctgttttgcaacnnnnnnngatacatggactaaaagcaaaaatagtccaacttactaggacctttt 334  Q
    |||||| || ||||||||||| || ||||||||| ||||| |||||       |||||| ||||||||| ||||||    | |||||||  |||||||||    
T  34538238 ggaccagtttcaaaaagttaagaaaatacaagggttgtttcgcaacaaaaaaagatacaaggactaaaaccaaaaacgtgctaacttaccgggacctttt 34538139  T
Q  335 acatatttaagcc 347  Q
    |||||||||||||    
T  34538138 acatatttaagcc 34538126  T

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Target: scaffold0517 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 6765 - 6870
Alignment:
Q  39 ttggtttttaaatttcaaaattcgatgattacgttttttaatttcat-cctatgtaaatatttg-tttttggttttagtccctcgaataacatcacttat 136  Q
    ||||||||||||  |||||||| |||| |||| |||||||| ||||| ||||||||||| | || ||||||||||||||||||  | |||||| ||||||    
T  6765 ttggtttttaaaaatcaaaatttgatgtttaccttttttaacttcatccctatgtaaatttgtgttttttggttttagtccctgtactaacattacttat 6864  T
Q  137 catctc 142  Q
    ||||||    
T  6865 catctc 6870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 113
Target Start/End: Complemental strand, 5677 - 5602
Alignment:
Q  39 ttggtttttaaatttcaaaattcgatgattacgttttttaatttcat-cctatgtaaatatttgtttttggtttta 113  Q
    |||||||||||| ||||||||| |||  ||||||||||||||||||| ||||||||||| |   ||||||||||||    
T  5677 ttggtttttaaaattcaaaatttgatttttacgttttttaatttcatccctatgtaaatttgcatttttggtttta 5602  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 33489665 - 33489760
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgttttttaatttcat-cctatgtaaatatttgtttttggttttagtccctc 120  Q
    ||||||||||| | ||  ||||||||||||||||| |||||||| ||||||||||| | | |||||||||| ||  ||||||||| ||||||||||    
T  33489665 gaaggtggaaagaatgaattttaaatttcaaaatttgatgattatgttttttaattccgtccctatgtaaaaatgcgtttttggtattagtccctc 33489760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 12890449 - 12890373
Alignment:
Q  133 ttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagccagcacaac 209  Q
    ||||||||| |||||| |||||||| ||||||||||||||  ||||||||| || || ||| |||||||| ||||||    
T  12890449 ttatcatctttcatgcaacataagcgtgttttgccaactcggcaagtgacatgtgtgactccgttagccatcacaac 12890373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 28592323 - 28592257
Alignment:
Q  102 tttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgcca 168  Q
    |||| |||||| ||||||| ||| | |||||||||||||| ||| ||||||||||| ||||||||||    
T  28592323 ttttgggttttggtccctcaaatcatatcacttatcatctgtcaggccacataagcgtgttttgcca 28592257  T

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Target: scaffold1176 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 2298 - 2160
Alignment:
Q  101 gtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgccaactcaacaagtgacacgtatgcctctgttagc 200  Q
    |||||||||||| ||||||| ||| | |||||||||||| | ||| ||||||||||| ||||||||||  |||  || || ||||| || ||| ||| ||    
T  2298 gtttttggttttggtccctcaaatcatatcacttatcatttttcaggccacataagcgtgttttgccacgtcagtaattgccacgtgtgactccgtttgc 2199  T
Q  201 cagcacaacattttt-taacggaagatgacgttagggac 238  Q
    |||| |||| ||||| |||| |||| | |||||||||||    
T  2198 cagctcaacgtttttgtaacagaagttaacgttagggac 2160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1118 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1118
Description:

Target: scaffold1118; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 2659 - 2592
Alignment:
Q  101 gtttttggttttagtccctcgaataacatcacttatcatctctcatgccacataagcatgttttgcca 168  Q
    |||||||||||| ||||||| ||| | |||| ||||||| | ||| ||| ||||||||||||||||||    
T  2659 gtttttggttttcgtccctcaaatcatatcatttatcatatgtcaggccccataagcatgttttgcca 2592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 173
Target Start/End: Original strand, 28050110 - 28050245
Alignment:
Q  40 tggtttttaaatttcaaaattcgatgattacgtttttt-aatttcatcc-tatgtaaatatttgtttttggttttagtccctcgaataacatcacttatc 137  Q
    |||||||||||||| ||| || |||| |||| |||||| |||||||||| || ||||||||  ||||||  ||||||||||||    ||||  |||||||    
T  28050110 tggtttttaaattttaaattttgatgtttacttttttttaatttcatccctacgtaaatatgcgttttttattttagtccctctgccaacaatacttatc 28050209  T
Q  138 atctctcatgccacataagcatgttttgccaactca 173  Q
    |||||||||| ||  | ||||  |||||||||||||    
T  28050210 atctctcatgtcatctcagcaacttttgccaactca 28050245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 19580195 - 19580099
Alignment:
Q  26 gaaggtggaaatattggtttttaaatttcaaaattcgatgattacgtttttt-aatttcatcc-tatgtaaatatttgtttttggttttagtccctc 120  Q
    |||| ||||||  ||| |||||||| || |||||| |||| |||| |||||| || ||||||| ||||| ||| || ||||||||||||||||||||    
T  19580195 gaagatggaaagtttgatttttaaaattaaaaatttgatgtttacttttttttaaattcatccctatgttaattttcgtttttggttttagtccctc 19580099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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