View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12698_high_6 (Length: 478)
Name: NF12698_high_6
Description: NF12698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12698_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 469
Target Start/End: Original strand, 47171472 - 47171920
Alignment:
| Q |
19 |
tgaagtggcttatgggttcaattgtaatggaatgtttaggggttgtgctactgagaatgggttcatggaggtgggaatttgggaatgacataaataatta |
118 |
Q |
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| T |
47171472 |
tgaagtggcttatgggttcaattgtaatggaatgtttaggggctgtgctactgagaatgggttcatggaggtgggaatttgggaatgacataaataatta |
47171571 |
T |
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| Q |
119 |
tataaaatagtattgagcttgttgctggtccnnnnnnnaattggggttctagctttggtttaaataggtgggagtcatttagtcctttgaattttagttg |
218 |
Q |
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| T |
47171572 |
tataaaatagtattgagcttgttgctggtcctttttttaactggggttctagctttggtttaaataggtgggagtcatttagtcctttgaattttagttg |
47171671 |
T |
|
| Q |
219 |
caagggttattttgttttctaccctagaattgggtacttatgttttcgtttcttccagggatgtaaatcattatcatataagtaatacaagatgatgatg |
318 |
Q |
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| T |
47171672 |
caagggttattttgttttctaccctagaattgggtacttatgttttcgtttcttccagggatgtaaatcattatcatataagtaatacaa---gatgatg |
47171768 |
T |
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| Q |
319 |
attttaatatttttgatctcgtacttctgatttttattcacaatgcatttgatctatcttctc--tgttttttcagaataagaagtttggaaccgatagt |
416 |
Q |
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| T |
47171769 |
attttaatatttttgatctcatacttctga-ttttattcataatgcatttgatctatcttctctttgttttttcagaataggaagtttggaaccgatagt |
47171867 |
T |
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| Q |
417 |
taattacttgattaaacatctatgtttcttattttcaattctaccattcatct |
469 |
Q |
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| T |
47171868 |
taattacttgattaaacatctatgtttcttattttcaattctaccattcatct |
47171920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 42162773 - 42162686
Alignment:
| Q |
19 |
tgaagtggcttatgggttcaattgtaatggaatgtttaggggttgtgctactgagaatgggttcatggaggtgggaatttgggaatga |
106 |
Q |
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| T |
42162773 |
tgaagtggcttatggatttaattgtaatgggatgtttagaggtgttgctactgaggatgggctcaaggaggtgggaatatggaaatga |
42162686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 5479399 - 5479317
Alignment:
| Q |
20 |
gaagtggcttatgggttcaattgtaatggaatgtttaggggttgtgctactgagaatgggttcatggaggtgggaatttggga |
102 |
Q |
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| T |
5479399 |
gaagttgcttatggatttaactgcaatggcatgtttaggggttgtgcttctgaggatggattcatggaggttggaatttggga |
5479317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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