View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12698_high_7 (Length: 446)
Name: NF12698_high_7
Description: NF12698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12698_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 22 - 433
Target Start/End: Original strand, 32138036 - 32138447
Alignment:
| Q |
22 |
ttagaacaagtagtttgtcgtccaaagagcaaggagctaaatcccaatttagaagcagccaaatcaaattgcaaaagattattctccaactgataccctc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32138036 |
ttagaacaagtagtttgtcgtccaaagagcaaggagctaaatcccaatttagaagcagccaaatcaaattgcaaaagattattctccaactgataccctc |
32138135 |
T |
|
| Q |
122 |
caatcacaattgaagtccttgtattcttaccaccattcacaaatccaagacacaaaacttcatcatttatactcaccattgaatttgcaccaaatatcct |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32138136 |
caatcacaattgaagtccttgtattcttaccaccattcacaaatccaagacacaaaacttcatcatttatactcaccattgaatttgcaccaaatatcct |
32138235 |
T |
|
| Q |
222 |
ccaaaccacattttcattttgcaaaaagagctcaatagtaggcacagctgcacccaatcgtgtcccagtcaaattagtgtaacaaaattcaaaaggcgca |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32138236 |
ccaaaccacattttcattttgcaaaaagagctcaatagtaggcacagctgcacccaatcgtgtcccagtcaaattagtgtaacaaaattcaaaaggcgca |
32138335 |
T |
|
| Q |
322 |
accgaacccaccctctttatgtttcttgcagcagacgctttcacgaaagtgtctgtaactgctttgtaaatagaagcttctaaaaccgtgtaaggatcaa |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32138336 |
accgaacccaccctctttatgtttcttgcagcagacgctttcacgaaagcgtctgtaactgctttgtaaatagaagcttctaaaaccgtgtaaggatcaa |
32138435 |
T |
|
| Q |
422 |
ccgtactaatct |
433 |
Q |
| |
|
|||||||||||| |
|
|
| T |
32138436 |
ccgtactaatct |
32138447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 22 - 433
Target Start/End: Original strand, 32147429 - 32147837
Alignment:
| Q |
22 |
ttagaacaagtagtttgtcgtccaaagagcaaggagctaaatcccaatttagaagcagccaaatcaaattgcaaaagattattctccaactgataccctc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32147429 |
ttagaacaagtagtttgtcgtccaaagagcaaggagctaaatcccaatttagaagcagccaaatcaaattgcaaaagattattctccaactgataccctc |
32147528 |
T |
|
| Q |
122 |
caatcacaattgaagtccttgtattcttaccaccattcacaaatccaagacacaaaacttcatcatttatactcaccattgaatttgcaccaaatatcct |
221 |
Q |
| |
|
||||||||||||||| || |||||||| ||||||| ||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
32147529 |
caatcacaattgaagcccatgtattctcaccaccaatcacaaaaccaagacacaaaacctcatcatttatattcaccattgaatttgcaccaaatatcct |
32147628 |
T |
|
| Q |
222 |
ccaaaccacattttcattttgcaaaaagagctcaatagtaggcacagctgcacccaatcgtgtcccagtcaaattagtgtaacaaaattcaaaaggcgca |
321 |
Q |
| |
|
||||| |||||| || |||||| | |||||||||||||| ||| | |||||||||||||||||||||| ||||||||||||||| |||||||| ||| |
|
|
| T |
32147629 |
ccaaatcacatt---gttctgcaaataaagctcaatagtaggtacatccgcacccaatcgtgtcccagtcacattagtgtaacaaaactcaaaaggtgca |
32147725 |
T |
|
| Q |
322 |
accgaacccaccctctttatgtttcttgcagcagacgctttcacgaaagtgtctgtaactgctttgtaaatagaagcttctaaaaccgtgtaaggatcaa |
421 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
32147726 |
accgaatccaccctttttatgtttcttgcagcagacgctttcacgaaagcgtctgtaactgctttgtaaatagaagcttccaaaactgtgtaaggatcaa |
32147825 |
T |
|
| Q |
422 |
ccgtactaatct |
433 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
32147826 |
cggtacttatct |
32147837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 57 - 433
Target Start/End: Original strand, 32126267 - 32126646
Alignment:
| Q |
57 |
gctaaatcccaatttagaagcagccaaatcaaattgcaaaagattattctccaactgataccctccaatcacaattgaagtccttgtattcttaccacca |
156 |
Q |
| |
|
|||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||| |
|
|
| T |
32126267 |
gctaaaacccaatctagacgcagccaaatcaaattgcaaaagattattctccaactgataccctccaatcacaatagaagtccttaggttcacaccaccg |
32126366 |
T |
|
| Q |
157 |
ttcacaaatccaagacacaaaacttcatcatttatactcaccattgaatttgcaccaaatatcctccaaaccacattttcattttgcaaaaagagctcaa |
256 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||| ||||||| |||||||||||||| || ||||||| |||||| || || |||| ||||||| |
|
|
| T |
32126367 |
ttaacaaatccaagacacaaaacctcatcatttatattcaccatcgaatttgcaccaaacatgctccaaatcacatt---gttctgtaaaagaagctcaa |
32126463 |
T |
|
| Q |
257 |
tagtaggcacagctgcacccaatcgtgtcccagtcaaatt------agtgtaacaaaattcaaaaggcgcaaccgaacccaccctctttatgtttcttgc |
350 |
Q |
| |
|
| |||||||||| ||||||||| | ||||| | |||||| | | ||||||||||||||||||| | ||| || | | ||||||||||||| |
|
|
| T |
32126464 |
ttgtaggcacagacgcacccaatggcgtccctggcaaattgtcaaaactataacaaaattcaaaaggcggagatgaatcctctgttgttatgtttcttgc |
32126563 |
T |
|
| Q |
351 |
agcagacgctttcacgaaagtgtctgtaactgctttgtaaatagaagcttctaaaaccgtgtaaggatcaaccgtactaatct |
433 |
Q |
| |
|
| |||| |||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
32126564 |
aacagatgctttcacaaaagcgtctgtaactgctttgtaaatagaagcttctagaaccgtgtaaggatcaaccgtactaatct |
32126646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University