View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12698_high_9 (Length: 442)
Name: NF12698_high_9
Description: NF12698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12698_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Original strand, 3467464 - 3467876
Alignment:
| Q |
18 |
aattttgctatggcgcttgctttttacttcaaaatgacattttgttggcaatgtatcttaagattcataataatattccattcagaattcaaaagaaaga |
117 |
Q |
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| T |
3467464 |
aattttgctatggcgcttgctttttacttcaaaatgacattttgttggcaatgtatcttaagattcataataatattccattcacgattcaaaagaaaga |
3467563 |
T |
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| Q |
118 |
taattttataagcttctttcctttatctttcttaatctaacaacttaggaaatttatccttcttcttggggcaactttacggtccaatttgtttcatttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3467564 |
taattttataagcttctttcctttatctttcttaatctaacaacttaggaaatttatccttcttcttggggcaactttacggtctaatttgtttcatttg |
3467663 |
T |
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| Q |
218 |
caggtttgaatctttcttacctttttaatgaggtccaagcaaagatggcgcttgatgtctctcctcaaaccctcaggtaagtctttgatcagttccatct |
317 |
Q |
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| T |
3467664 |
caggtttgaatctttcttacctttttaatgaggtccaagcaaagatggcgcttgatgtctctcctcaaaccctcaggtaagtctttgatcagttccatct |
3467763 |
T |
|
| Q |
318 |
catcttctcctcccatggctgcccatctctgacgttcaaaatgccgaactctttgtcttaatcgagacggcaactgcctcctcctcatccaccattccat |
417 |
Q |
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| T |
3467764 |
catcttctcctcccatggctgcccatctctgacgttcaaaatgccgaactctttgtcttaatcgagacggcaactgcctcctcctcatccaccattccat |
3467863 |
T |
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| Q |
418 |
gtctcggcatctc |
430 |
Q |
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| T |
3467864 |
gtctcggcatctc |
3467876 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 38909328 - 38909280
Alignment:
| Q |
48 |
aaaatgacatt-ttgttggcaatgtatcttaagattcataataatattc |
95 |
Q |
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||||||||||| || |||||||||||||||| |||||||||||| |||| |
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| T |
38909328 |
aaaatgacattattattggcaatgtatcttacgattcataataagattc |
38909280 |
T |
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