View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12698_low_11 (Length: 440)
Name: NF12698_low_11
Description: NF12698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12698_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 4 - 424
Target Start/End: Original strand, 8299312 - 8299732
Alignment:
| Q |
4 |
agaggagaatcaagtgttacagtttgtatactcatcgaaatttgagaaagaaatcagtgtggtattttagataatgaaaaatatcttcaacaccaaa-tg |
102 |
Q |
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| T |
8299312 |
agagtagaatcaagtattacagtttgtatactcatcgaaatttgagaaagaaatcagtgtggtattctatataatgaaaaatatcttcaacaccaaaatg |
8299411 |
T |
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| Q |
103 |
gtgtgacttaaagcctctgagactatccattgattccacagaaaaatttgaggc-gaggttaaacatcaagagaaattttcagattcaaacaaacaaata |
201 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8299412 |
gtgtgacttaaagcct--gagactatccattgattccacagaaaaatttgaggcaggggttaaacatcaagagaaattttcagattcaaacaaacaaata |
8299509 |
T |
|
| Q |
202 |
acccaatgtaggaaatgaaattatcaagggaagttttcagaatgttaaccaacaacgttttcatacattaaattcaaaactttcattaaaaacaagataa |
301 |
Q |
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| T |
8299510 |
acccaatgtaggaaatgaaattatcaagggaagttttcagaatgttaaccaacaaagttttcatacattaaattcaaaactttcattaaaaacaagataa |
8299609 |
T |
|
| Q |
302 |
aaaccagcctaattcatatttattaaatggagaaattaaaaccagccaactagatgtttataaatgagccgattgtagtgcagatcttcagcattcactc |
401 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8299610 |
aaaccagcctaattcatatttattaaatggagaaataaaaaccagccaactagatgtttataaatgagccgattgtagtgcagatcttcagcattcattc |
8299709 |
T |
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| Q |
402 |
gtgagactattgaaggaaccaca |
424 |
Q |
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| T |
8299710 |
gtgagactattgaaggaaccaca |
8299732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 236 - 330
Target Start/End: Original strand, 8312678 - 8312772
Alignment:
| Q |
236 |
tttcagaatgttaaccaacaacgttttcatacattaaattcaaaactttcattaaaaacaagataaaaaccagcctaattcatatttattaaatg |
330 |
Q |
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| T |
8312678 |
tttcacaatgttaactaacaaagttttcaaacattaaattccaaactttcattaaaaacaagataaaaaccagcctaattcatttttattaaatg |
8312772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 8308880 - 8308940
Alignment:
| Q |
162 |
taaacatcaa-gagaaattttcagattcaaacaaacaaataacccaatgtaggaaatgaaa |
221 |
Q |
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| T |
8308880 |
taaacatcaaagagaaattttcagattcaatcaaacaaataacccaatgtaggaaatgaaa |
8308940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 78 - 230
Target Start/End: Original strand, 8312332 - 8312486
Alignment:
| Q |
78 |
tgaaaaatatcttcaacaccaaatggtgtgacttaaagcctctgagactatccattgattccacagaaa--aatttgaggcgaggttaaacatcaagaga |
175 |
Q |
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||||||| ||||||||||| |||||| || |||||| ||||| ||||| |||||||||||| | ||| || | || || ||| |||||||| | | |
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| T |
8312332 |
tgaaaaacatcttcaacactgaatggtttgccttaaaacctcttagactgtccattgattcccaaaaaataaaatcgaagcagagtttaacatcaacaaa |
8312431 |
T |
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| Q |
176 |
aattttcagattcaaacaaacaaataacccaatgtaggaaatgaaattatcaagg |
230 |
Q |
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| T |
8312432 |
aaatttcacattcgaacaaacaaataacccaatgcaagaaatgaaattatcaagg |
8312486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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