View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12698_low_12 (Length: 430)
Name: NF12698_low_12
Description: NF12698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12698_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 2 - 412
Target Start/End: Original strand, 23412160 - 23412573
Alignment:
| Q |
2 |
atagaaccacaatatatgataaaattctccctcgttacatattttgtttaaatctaaatattcaaattaaaaacattaatattgaagctttaaacacaat |
101 |
Q |
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| T |
23412160 |
atagaaccacaatatatgataaaattctctctcggtacatattttttttaaatctaaatattcaaattaaaaacataaatattgaagctttaaacacaat |
23412259 |
T |
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| Q |
102 |
aaggggcttttagcctctttgtata----gtgaccaaaagcaccttgttattttaatataagagtgtgacttaaatttaatnnnnnnnnnnttatagaac |
197 |
Q |
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| T |
23412260 |
aaggggcttttagtctctttgtatatatagtgaccaaaagcaccctgttattttaatataagagtgtgacttaaatttaataaaaaaaaa-ttatagaac |
23412358 |
T |
|
| Q |
198 |
aaagtaaaactaataataaaattttacaatcttcttaattatttttatatcacttttacttctttgtttctttcagctgttgtatcgaatttttatagaa |
297 |
Q |
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| T |
23412359 |
aaagtaaaactaataataaaattttccaatcttcttaattatttttatatcacttttacttctttgtttctttcagctgttgtatcgaatttttatagaa |
23412458 |
T |
|
| Q |
298 |
ctaagacatcacacgttcacgtattcaggatattggtggtcgtccaattattattagacaattcaaaaatagagatattaagcttgaattaagatcattt |
397 |
Q |
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| T |
23412459 |
ctaagacataacacgttcacgtattcaggatattggtggtcgtccaattattattagacaatccaaaaatagagatattaagcttgaattaagatcattt |
23412558 |
T |
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| Q |
398 |
gatcttagtcgaaca |
412 |
Q |
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| T |
23412559 |
gatcttagtcgaaca |
23412573 |
T |
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