View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12698_low_13 (Length: 375)
Name: NF12698_low_13
Description: NF12698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12698_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 10689996 - 10690335
Alignment:
| Q |
1 |
tactattcgcatactggtttttaaagtaagatccaaaggagcatccttaccaggtatattaatatggcaaccagagaaggaattttctccggcaatggta |
100 |
Q |
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| T |
10689996 |
tactatttgcatactggtttttaaagtaagatccaaaggagcattcttgccaggtatattaatatgacatccagagaaggaattttctcgtgcaatggta |
10690095 |
T |
|
| Q |
101 |
ggtgctgctgaatcaacaagtgaggctagtcctttcaatgcttgtcccatgtcgatacctgctgctgctgctcctccagaagatctac---caacagctg |
197 |
Q |
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| T |
10690096 |
ggtactgctgaattaacaagtgaggctagtcctttcaatgcttgtcccatgtcaatacctgatgttgctgctgctccagaagatctaccaacaacagctg |
10690195 |
T |
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| Q |
198 |
atgatgaaaggtcagcaacactaaggaacttttcattggtttcaccagcctggcctttggcatcattctttagattactactagtttgctccttagatac |
297 |
Q |
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| T |
10690196 |
atgatgaaaggtcagcaacactaaggaacttttcattgctt---------------------tcattatttagattactactagtttgctccttagatac |
10690274 |
T |
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| Q |
298 |
aattctaaacatggactttttcgcagaaaatacttcaccaattagttgtgtatctttcgcg |
358 |
Q |
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| T |
10690275 |
aattctaaacatggactttttcgcagaaaatacttcaccaattagttgtgtatctttcgcg |
10690335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 43554116 - 43554060
Alignment:
| Q |
1 |
tactattcgcatactggtttttaaagtaagatccaaaggagcatccttaccaggtat |
57 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| |
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| T |
43554116 |
tactattcgcatactggtttttaaagtaagatccaaaggagccttcttgccaggtat |
43554060 |
T |
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