View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12698_low_14 (Length: 356)
Name: NF12698_low_14
Description: NF12698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12698_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 15 - 348
Target Start/End: Original strand, 36805831 - 36806165
Alignment:
| Q |
15 |
atatttgacggtttgtgtctcatatacttgttctcgtatttccacgtccaaatccttagattagatctcttcaccacccaacacaacacaacgtaagaca |
114 |
Q |
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| T |
36805831 |
atatttgacggtttgtgtctcatatacttgttctcgtatttacacgtccaaatccttagattagatctcttcaccacccaacacaacacaacataagaca |
36805930 |
T |
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| Q |
115 |
agacaacaatgtttttgtttttcccattttctcacgacattgccaccaaccagttactctagattggtgtttcaacttttcaactttcatgtttgaatca |
214 |
Q |
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| T |
36805931 |
agacaacaatgtttttgtttatcccattttctcacgacattgccaccaaccagttactctagattggtgtttcaacttttcaactttcatgtttgaatca |
36806030 |
T |
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| Q |
215 |
atacttctaacaaaagggtacatttcaactttatatacttctttcttcctcatacatacatttctgca-nnnnnnnngtctcacccctttggtttttgtt |
313 |
Q |
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| T |
36806031 |
atacttctaacaaaagggtacatttcaactttatatacttctttcttcctcatacatacatttctgcatttttttttgtctcacccctttggtttttgtt |
36806130 |
T |
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| Q |
314 |
gcagttattttgaaaaaccggtattgcttcttctc |
348 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
36806131 |
gcagttattttgaaaaaccggtattgcttcttctc |
36806165 |
T |
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