View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12698_low_16 (Length: 324)

Name: NF12698_low_16
Description: NF12698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12698_low_16
NF12698_low_16
[»] chr7 (1 HSPs)
chr7 (26-314)||(43199788-43200076)


Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 26 - 314
Target Start/End: Complemental strand, 43200076 - 43199788
Alignment:
Q  26 aagtagtacatgcattagagcacaatatacttacaatggtacttggtacagaatagctagcagagtaaagtatgggctaaatcagattaatccaaatcaa 125  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43200076 aagtagtacatgcattagagaaccatatacttacaatggtacttggtacagaatagctagcagagtaaagtatgggctaaatcagattaatccaaatcaa 43199977  T
Q  126 aactgaaagattatactccttctagtaccttaacaaattaaattacacccaaatatcgactaggcttagtcaatgggaatcacatgccatatggcacgct 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43199976 aactgaaagattatactccttctagtaccttaacaaattaaattacacccaaatatcgactaggcttagtcaatgggaatcacatgccatatggcacgct 43199877  T
Q  226 tagctaattcactgcacgtgcagtgcacgtcattatgtaacaaaattttctaccctcttcataaggaaaatgaagtcctttattctgtg 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43199876 tagctaattcactgcacgtgcagtgcacgtcattatgtaacaaaattttctaccctcttcatcaggaaaatgaagtcctttattctgtg 43199788  T

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