View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12698_low_18 (Length: 309)

Name: NF12698_low_18
Description: NF12698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12698_low_18
NF12698_low_18
[»] chr6 (11 HSPs)
chr6 (18-309)||(11170349-11170640)
chr6 (18-309)||(11209171-11209462)
chr6 (18-309)||(11275733-11276024)
chr6 (18-309)||(11160916-11161207)
chr6 (18-309)||(11196502-11196793)
chr6 (18-309)||(11156049-11156340)
chr6 (195-309)||(11199844-11199958)
chr6 (214-309)||(11241520-11241615)
chr6 (18-91)||(11315049-11315122)
chr6 (18-91)||(11199492-11199565)
chr6 (18-91)||(11241739-11241812)
[»] scaffold1207 (1 HSPs)
scaffold1207 (18-309)||(667-958)


Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 11170349 - 11170640
Alignment:
Q  18 caagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagattcttgctgagatt 117  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  11170349 caagcacaacatcatgaattttactcttcactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagactcttactgagatt 11170448  T
Q  118 gtcgaaaagtccacgactaatccctgaggagaaatcttcacctttatataaacaatctatctcgatctcagtctgattattggatgaaagtgtacatttt 217  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  11170449 gtcgaaaattccacgactaatcactgaggagaaatcttcacctttatataaacaatctatctcgatgtcagtcttattattggatgaaagtgtacatttt 11170548  T
Q  218 gctttctcgcaagcagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaactctttcacaaaatg 309  Q
    ||| ||||||||||||||||||||||| ||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  11170549 gctctctcgcaagcagtcttcagcctcctaatggctcttggatctccactaatgtcgagtttatgttttctcaagaactctttcacaaaatg 11170640  T

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Target: chr6; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 11209171 - 11209462
Alignment:
Q  18 caagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagattcttgctgagatt 117  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||||     
T  11209171 caagcacaacatcatgaatgttactcttcactatcccactatcttctatacacttttctacaatctccatgcactggtcaaaaagactcttgttgagatc 11209270  T
Q  118 gtcgaaaagtccacgactaatccctgaggagaaatcttcacctttatataaacaatctatctcgatctcagtctgattattggatgaaagtgtacatttt 217  Q
    ||||||   | |||||||||||  |||  | ||||||| ||||| || ||||||||||||||| || | ||||  | |||||   |||||| | | ||||    
T  11209271 gtcgaactttgcacgactaatcgttgacaaaaaatctttaccttcatttaaacaatctatctcaatgttagtcgcagtattgacagaaagtatccttttt 11209370  T
Q  218 gctttctcgcaagcagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaactctttcacaaaatg 309  Q
    ||| ||||||||||||||||||||||| ||| ||||||||||  ||||||||| || | ||| |  || |||||||||||||||||||||||    
T  11209371 gctctctcgcaagcagtcttcagcctcctaagggctcttggatttccactaatgtccattttttccttcctcaagaactctttcacaaaatg 11209462  T

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Target: chr6; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 11275733 - 11276024
Alignment:
Q  18 caagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagattcttgctgagatt 117  Q
    ||||||||||||||||||||||||| ||   ||||||||||||| ||||||||||||||||| | ||||||||| ||| ||||||| ||||| ||||||     
T  11275733 caagcacaacatcatgaatgttactcttgtttatcccactatctgctatacacttttctacaatttccatgcactggtaaaaaagactcttgttgagatc 11275832  T
Q  118 gtcgaaaagtccacgactaatccctgaggagaaatcttcacctttatataaacaatctatctcgatctcagtctgattattggatgaaagtgtacatttt 217  Q
     |||||   | |||||||||||   ||||||||||||  |||||  | |||||| |||||||| ||   ||||| | |||||   |||||| | | ||||    
T  11275833 atcgaactttgcacgactaatcaacgaggagaaatctgtaccttggtttaaacattctatctcaatggtagtctcactattgacagaaagtatccttttt 11275932  T
Q  218 gctttctcgcaagcagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaactctttcacaaaatg 309  Q
     || ||||||||||||||||||||||| ||||||||||||||  ||||||||| ||   |||||| || |||||||||||||||||||||||    
T  11275933 actctctcgcaagcagtcttcagcctcctaatggctcttggatctccactaatgtcatttttatgcttcctcaagaactctttcacaaaatg 11276024  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 11160916 - 11161207
Alignment:
Q  18 caagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagattcttgctgagatt 117  Q
    |||| ||||||||||||||| |||| ||  | |||||||||||   |||||||||||||||| |||||||||||  ||| ||  |||||||| |||| |     
T  11160916 caaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttctacaatctccatgcacttgtcgaagtgattcttgttgagttc 11161015  T
Q  118 gtcgaaaagtccacgactaatccctgaggagaaatcttcacctttatataaacaatctatctcgatctcagtctgattattggatgaaagtgtacatttt 217  Q
     || ||   | | |||||||||  |||| ||||||||   |||| || |||||  |||||||| ||    |||  | ||||||| |||||| | | ||||    
T  11161016 ctcaaactttgcgcgactaatcgatgagtagaaatctattccttgatttaaactctctatctcaatggtggtcgtagtattggaagaaagtatccttttt 11161115  T
Q  218 gctttctcgcaagcagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaactctttcacaaaatg 309  Q
    ||||||||||||||||  |||| |||| ||| ||||||||||  ||||||||| |||| |||||  || ||| |||||||||||||||||||    
T  11161116 gctttctcgcaagcagagttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatg 11161207  T

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Target: chr6; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 11196502 - 11196793
Alignment:
Q  18 caagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagattcttgctgagatt 117  Q
    |||| ||||||||||||||| |||| ||  | |||||||||||   |||||||||||| ||| |||||||||||  ||| ||  |||||||| |||| |     
T  11196502 caaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatctccatgcacttgtcgaagtgattcttgttgagttc 11196601  T
Q  118 gtcgaaaagtccacgactaatccctgaggagaaatcttcacctttatataaacaatctatctcgatctcagtctgattattggatgaaagtgtacatttt 217  Q
     || ||   | | |||||||||  |||| ||||||||  ||||| || |||||   ||||||| ||    |||  | ||||||| |||||| | | ||||    
T  11196602 ctcaaactttgcgcgactaatcgatgagtagaaatctataccttgatttaaactccctatctcaatggtggtcgtagtattggaagaaagtatccttttt 11196701  T
Q  218 gctttctcgcaagcagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaactctttcacaaaatg 309  Q
    |||||||||||||||| ||||| |||| ||| ||||||||||  ||||||||| |||| |||||  || ||| |||||||||||||||||||    
T  11196702 gctttctcgcaagcagacttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactctttcacaaaatg 11196793  T

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Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 11156049 - 11156340
Alignment:
Q  18 caagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagattcttgctgagatt 117  Q
    |||| ||||||||||||||| |||| ||  | |||||||||||   |||||||||||| ||| |||||||||||  ||| ||  |||||||| |||| |     
T  11156049 caaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatctccatgcacttgtcgaagtgattcttgttgagttc 11156148  T
Q  118 gtcgaaaagtccacgactaatccctgaggagaaatcttcacctttatataaacaatctatctcgatctcagtctgattattggatgaaagtgtacatttt 217  Q
     || ||   | |||||||||||  |||| ||||||||  ||||| || |||||  |||||||  ||    ||   | ||||||| |||||| | | ||||    
T  11156149 ctcaaactttgcacgactaatcgatgagtagaaatctataccttgatttaaactctctatctgaatggtggttgtaatattggaagaaagtatccttttt 11156248  T
Q  218 gctttctcgcaagcagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaactctttcacaaaatg 309  Q
    |||||||||||||||| ||||| |||| ||| ||||||||||  ||||||||| |||| |||||  || ||| ||||||| |||||||||||    
T  11156249 gctttctcgcaagcagacttcaacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaactcattcacaaaatg 11156340  T

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Target: chr6; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 195 - 309
Target Start/End: Original strand, 11199844 - 11199958
Alignment:
Q  195 tattggatgaaagtgtacattttgctttctcgcaagcagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaa 294  Q
    ||||||| |||||| | | |||||||||||||||||||| ||||  |||| ||| ||||||||||  ||||||||| |||| |||||  || ||| ||||    
T  11199844 tattggaagaaagtatcctttttgctttctcgcaagcagacttctacctcctaagggctcttggatctccactaatgtcgattttatacttcctcgagaa 11199943  T
Q  295 ctctttcacaaaatg 309  Q
    |||||||||||||||    
T  11199944 ctctttcacaaaatg 11199958  T

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Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 309
Target Start/End: Complemental strand, 11241615 - 11241520
Alignment:
Q  214 ttttgctttctcgcaagcagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaactctttcacaaaatg 309  Q
    |||||||||||||||||||| ||||| |||| ||| ||||||||||  || |||||| |||| |||||  || ||| |||||||||||||||||||    
T  11241615 ttttgctttctcgcaagcagacttcaacctcctaagggctcttggatctctactaatgtcgattttatacttcctcgagaactctttcacaaaatg 11241520  T

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Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 11315122 - 11315049
Alignment:
Q  18 caagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac 91  Q
    ||||||||||||||||||||| ||| || || ||||||||||| |||| ||||||||||||| ||| |||||||    
T  11315122 caagcacaacatcatgaatgtcactcttgaccatcccactatcctctagacacttttctacaatcttcatgcac 11315049  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 11199492 - 11199565
Alignment:
Q  18 caagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac 91  Q
    |||| ||||||||||||||| |||| ||  | |||||||||||   |||||||||||||||| |||||||||||    
T  11199492 caaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttctacaatctccatgcac 11199565  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 11241812 - 11241739
Alignment:
Q  18 caagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcac 91  Q
    |||| ||||||||||||||| |||| ||  | |||||||||||   |||||||||||| ||| |||||||||||    
T  11241812 caaggacaacatcatgaatgctactcttgtccatcccactatcaattatacacttttccacaatctccatgcac 11241739  T

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Target: scaffold1207 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 667 - 958
Alignment:
Q  18 caagcacaacatcatgaatgttacttttcactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagattcttgctgagatt 117  Q
    |||| ||||||||||||| |||||| ||   ||||||||||||| ||||||| ||||||||||||||||||||| ||| ||||||| ||||| ||||||     
T  667 caaggacaacatcatgaaagttactcttgtttatcccactatctgctatacagttttctacactctccatgcactggttaaaaagactcttgttgagatc 766  T
Q  118 gtcgaaaagtccacgactaatccctgaggagaaatcttcacctttatataaacaatctatctcgatctcagtctgattattggatgaaagtgtacatttt 217  Q
     || ||   | |||||||||||   |||||||||| |  |||||  | |||||| |||||||| ||   ||||| | |||||   |||||| | | ||||    
T  767 atcaaactttgcacgactaatcgacgaggagaaatttgtaccttggtttaaacactctatctcaatggtagtctaagtattgacagaaagtatccttttt 866  T
Q  218 gctttctcgcaagcagtcttcagcctcttaatggctcttggagatccactaatatcgagtttatgttttctcaagaactctttcacaaaatg 309  Q
    | | |||| |||||||||||||||||| ||| ||||||||||  ||||||||| |||| |||||  || || |||||| |||||||||||||    
T  867 gatctctcacaagcagtcttcagcctcctaacggctcttggatctccactaatgtcgattttatacttccttaagaacactttcacaaaatg 958  T

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