View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12698_low_21 (Length: 292)
Name: NF12698_low_21
Description: NF12698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12698_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 44432236 - 44432514
Alignment:
| Q |
1 |
ccctaactaactaacaaacctgttgtgttgtgaatgaattgtataatagagatatgtggggtagggcgtagtatagtatattcaaatcaattgtatagtg |
100 |
Q |
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| T |
44432236 |
ccctaactaactaacaaacctgttgtgttgtgaatgaattgtataatagagatatgtggggtagggcgtagtatagtatattcaaatcaattgtatagtg |
44432335 |
T |
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| Q |
101 |
g-tacaggttcattgatacatacatttggta----agtaagaaaagacaaattaagagcgcgcgaaagagattagaaaatgaagaagacaacaacaaaac |
195 |
Q |
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| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44432336 |
ggtacaggttcattgatacatacatttggtggtagagtaagaaaagacaaattaagagcgcgcgaaagagattagaaaatgaagaagacaacaacaaaac |
44432435 |
T |
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| Q |
196 |
gcccttccaagaaatcccacgccgccgaaaatggaaacggaaagcctccttccccttctttccaaccgtataatctcat |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44432436 |
gcccttccaagaaatcccacgccgccgaaaatggaaacggaaagcctccttccccttcttcccaaccgtataatctcat |
44432514 |
T |
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