View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12698_low_22 (Length: 270)

Name: NF12698_low_22
Description: NF12698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12698_low_22
NF12698_low_22
[»] chr3 (19 HSPs)
chr3 (10-251)||(9838027-9838268)
chr3 (10-251)||(9848905-9849146)
chr3 (164-251)||(10031117-10031204)
chr3 (164-251)||(10126058-10126145)
chr3 (10-76)||(10376507-10376573)
chr3 (164-251)||(9837822-9837907)
chr3 (164-251)||(9848700-9848785)
chr3 (164-251)||(11768407-11768494)
chr3 (10-72)||(10364460-10364522)
chr3 (174-241)||(10259863-10259930)
chr3 (160-251)||(10657922-10658010)
chr3 (13-82)||(11768569-11768638)
chr3 (10-72)||(10434706-10434768)
chr3 (15-72)||(10076611-10076668)
chr3 (164-251)||(10662637-10662721)
chr3 (10-58)||(10505144-10505192)
chr3 (164-235)||(10076299-10076370)
chr3 (199-247)||(10516626-10516674)
chr3 (10-72)||(10579947-10580008)
[»] scaffold0083 (1 HSPs)
scaffold0083 (164-249)||(50705-50790)
[»] chr2 (1 HSPs)
chr2 (10-65)||(26906249-26906304)
[»] chr8 (1 HSPs)
chr8 (10-52)||(44958340-44958382)
[»] chr5 (1 HSPs)
chr5 (13-52)||(19956982-19957021)


Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 9838268 - 9838027
Alignment:
Q  10 gcagagagaaaagcgcctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcaggtagtatgaaatgtgtagctaatagcagaattt 109  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838268 gcagagagaaaagcgcctccaatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcaggtagtatgaaatgtgtagctaatagcagaattt 9838169  T
Q  110 tgaagcaagtatctctactaagcatgtgaatgaatggacaatataatgtttttaaaagctggaaagcaaagcttatcattgtttaatattggacccacat 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  9838168 tgaagcaagtatctctactaagcatgtgaatgaatggacaatataatgttttgaaaagctggaaagcaaagcttaacattgtttaatattggacccacat 9838069  T
Q  210 ccctcaaaataattgatacaaagaaacagaaaaagttgcaca 251  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  9838068 ccctcaaaataattgatacaaagaaaaagaaaaagttgcaca 9838027  T

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Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 9849146 - 9848905
Alignment:
Q  10 gcagagagaaaagcgcctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcaggtagtatgaaatgtgtagctaatagcagaattt 109  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9849146 gcagagagaaaagcgcctccaatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcaggtagtatgaaatgtgtagctaatagcagaattt 9849047  T
Q  110 tgaagcaagtatctctactaagcatgtgaatgaatggacaatataatgtttttaaaagctggaaagcaaagcttatcattgtttaatattggacccacat 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  9849046 tgaagcaagtatctctactaagcatgtgaatgaatggacaatataatgttttgaaaagctggaaagcaaagcttaacattgtttaatattggacccacat 9848947  T
Q  210 ccctcaaaataattgatacaaagaaacagaaaaagttgcaca 251  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  9848946 ccctcaaaataattgatacaaagaaaaagaaaaagttgcaca 9848905  T

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Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 10031204 - 10031117
Alignment:
Q  164 aaagctggaaagcaaagcttatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaacagaaaaagttgcaca 251  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  10031204 aaagctggaaagcaaagctcatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaaaagaaaaagttccaca 10031117  T

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Target: chr3; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 10126145 - 10126058
Alignment:
Q  164 aaagctggaaagcaaagcttatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaacagaaaaagttgcaca 251  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  10126145 aaagctggaaagcaaaggtcatcattgtttaatattggacccacatccctcaaaataattgatacaaagcaaaagaaaaagttgcaca 10126058  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 10376507 - 10376573
Alignment:
Q  10 gcagagagaaaagcgcctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcag 76  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10376507 gcagagagaaaagcacctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcag 10376573  T

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Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 9837907 - 9837822
Alignment:
Q  164 aaagctggaaagcaaagcttatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaacagaaaaagttgcaca 251  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| |||||||| || ||||||||||||    
T  9837907 aaagctggaaagcaaagctt--cattgtttaatattggacccacatcccacaaaataattgatgcaaagaaaaaggaaaagttgcaca 9837822  T

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Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 9848785 - 9848700
Alignment:
Q  164 aaagctggaaagcaaagcttatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaacagaaaaagttgcaca 251  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||| |||||||| || ||||||||||||    
T  9848785 aaagctggaaagcaaagctt--cattgtttaatattggacccacatcccacaaaataattgatgcaaagaaaaaggaaaagttgcaca 9848700  T

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Target: chr3; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 11768494 - 11768407
Alignment:
Q  164 aaagctggaaagcaaagcttatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaacagaaaaagttgcaca 251  Q
    ||||| ||||||||||| | | ||||| ||||||||||||| ||||||| |||||||||||||||||||||| || ||||||||||||    
T  11768494 aaagcgggaaagcaaagttcaccattggttaatattggacctacatcccacaaaataattgatacaaagaaaaaggaaaagttgcaca 11768407  T

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Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 10364460 - 10364522
Alignment:
Q  10 gcagagagaaaagcgcctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaa 72  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||    
T  10364460 gcagagagaaaagctcctcctatcatagttgcagccatcttctgttgatattgttaaagcaaa 10364522  T

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Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 10259930 - 10259863
Alignment:
Q  174 agcaaagcttatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaacagaaa 241  Q
    ||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||| || |||||    
T  10259930 agcaaaggtcatcattgtttaatattggacccacatccttcaaaataattgatacaaagcaaaagaaa 10259863  T

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Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 251
Target Start/End: Complemental strand, 10658010 - 10657922
Alignment:
Q  160 tttaaaagctggaaagcaaagcttatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaacagaaaaagttgcaca 251  Q
    ||||||||||||||||||||| | |||| || |||||   |||||||||||| ||||||||||||||||||||||| || ||||||| ||||    
T  10658010 tttaaaagctggaaagcaaaggtcatcagtgattaat---ggacccacatccttcaaaataattgatacaaagaaaaaggaaaagttacaca 10657922  T

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Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 11768638 - 11768569
Alignment:
Q  13 gagagaaaagcgcctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcaggtagta 82  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||| | | |||||||| |||||    
T  11768638 gagagaaaagcgcctcctatcatagttgccgccatcttcagttgatcttgttagaccaaatcagctagta 11768569  T

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Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 10434706 - 10434768
Alignment:
Q  10 gcagagagaaaagcgcctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaa 72  Q
    |||||||||||||| ||||||||||||||||||||||||||||  |||| |||| ||||||||    
T  10434706 gcagagagaaaagctcctcctatcatagttgcagccatcttctaatgatattgttaaagcaaa 10434768  T

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Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 10076668 - 10076611
Alignment:
Q  15 gagaaaagcgcctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaa 72  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||| | ||||||||    
T  10076668 gagaaaagcacctcctatcatagttgcagccatcttcagttgatcttattaaagcaaa 10076611  T

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Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 10662721 - 10662637
Alignment:
Q  164 aaagctggaaagcaaagcttatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaacagaaaaagttgcaca 251  Q
    ||||||||||||||||| | |||| || |||||   |||||||||||| ||||||||||| ||||||||||| || ||||||||||||    
T  10662721 aaagctggaaagcaaagttcatcagtgattaat---ggacccacatccttcaaaataattaatacaaagaaaaaggaaaagttgcaca 10662637  T

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Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 10505192 - 10505144
Alignment:
Q  10 gcagagagaaaagcgcctcctatcatagttgcagccatcttctgttgat 58  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  10505192 gcagagagaaaagttcctcctatcatagttgcagccatcttctgttgat 10505144  T

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Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 10076370 - 10076299
Alignment:
Q  164 aaagctggaaagcaaagcttatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaa 235  Q
    |||||||||||| |||||| |  | || ||||||||||||||||||||| ||||||||||||||||| ||||    
T  10076370 aaagctggaaagtaaagctcagtagtggttaatattggacccacatcccacaaaataattgatacaaggaaa 10076299  T

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Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 247
Target Start/End: Complemental strand, 10516674 - 10516626
Alignment:
Q  199 tggacccacatccctcaaaataattgatacaaagaaacagaaaaagttg 247  Q
    ||||||||||||| ||||||||||||||||||||||| || ||||||||    
T  10516674 tggacccacatccttcaaaataattgatacaaagaaaaaggaaaagttg 10516626  T

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Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 72
Target Start/End: Complemental strand, 10580008 - 10579947
Alignment:
Q  10 gcagagagaaaagcgcctcctatcatagttgcagccatcttctgttgatcttgtaaaagcaaa 72  Q
    |||||||| ||||| ||||| |||||||||||||||||||| ||||||| |||| ||||||||    
T  10580008 gcagagaggaaagcacctccaatcatagttgcagccatcttgtgttgat-ttgttaaagcaaa 10579947  T

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Target: scaffold0083 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 50705 - 50790
Alignment:
Q  164 aaagctggaaagcaaagcttatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaacagaaaaagttgca 249  Q
    ||||||||||||||||||| | || || ||||||||||||||||||||| |||||||||||||||||||||| || |||| |||||    
T  50705 aaagctggaaagcaaagctcagcagtggttaatattggacccacatcccacaaaataattgatacaaagaaaaaggaaaaattgca 50790  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 26906304 - 26906249
Alignment:
Q  10 gcagagagaaaagcgcctcctatcatagttgcagccatcttctgttgatcttgtaa 65  Q
    ||||||||||||||  |||||||||||| |||||||||||||| |||| |||||||    
T  26906304 gcagagagaaaagcttctcctatcatagctgcagccatcttctattgaacttgtaa 26906249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 44958340 - 44958382
Alignment:
Q  10 gcagagagaaaagcgcctcctatcatagttgcagccatcttct 52  Q
    ||||| |||||||| ||||||||||||||||||||||||||||    
T  44958340 gcagatagaaaagctcctcctatcatagttgcagccatcttct 44958382  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 19957021 - 19956982
Alignment:
Q  13 gagagaaaagcgcctcctatcatagttgcagccatcttct 52  Q
    ||||||||||| |||||||||||||||||| |||||||||    
T  19957021 gagagaaaagctcctcctatcatagttgcaaccatcttct 19956982  T

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