View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12698_low_25 (Length: 250)
Name: NF12698_low_25
Description: NF12698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12698_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 9e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 8299263 - 8299044
Alignment:
| Q |
1 |
attacatcaatgatgcaaattaatcaaaaaatttcaaattcttgattgcgtgaatattttatcttgatgtgtttacatctgcctcaattttttctgtgaa |
100 |
Q |
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| T |
8299263 |
attacatcaatgatgcaaattaatcacaaattttcaaattcttgattgcgtgaatattttatcttcatgtgtttacatctgcctcaatt----------- |
8299175 |
T |
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| Q |
101 |
gtcaatggatttaaaagactgtaaggcacgccatttggtgattgaagttgtttttcagttgacaggcaaacatgatgaagacattgaagaatatagtaat |
200 |
Q |
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| T |
8299174 |
-------gatttaaaagactgtaaggcacgccatttggtgattgaagttgtttttcagttgacaggca--catgatgaagacattgaagaatatagtaat |
8299084 |
T |
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| Q |
201 |
ccattcttagttacactatcatataattcacctccctttg |
240 |
Q |
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| T |
8299083 |
ccactcttagttacactatcatataattcacctccctttg |
8299044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Original strand, 18281905 - 18281951
Alignment:
| Q |
88 |
ttttttctgtgaagtcaatggatttaaaagactgtaaggcacgccat |
134 |
Q |
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| T |
18281905 |
ttttttgtgtgaagtcaatggatttaaaagacttcaaggcacaccat |
18281951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 240
Target Start/End: Complemental strand, 30255578 - 30255511
Alignment:
| Q |
176 |
tgaagacattgaagaatata---gtaatccattcttagttacactatcatataattcacctccctttg |
240 |
Q |
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| T |
30255578 |
tgaagacattggagaatatactagtaatctattcttagttacaatatcatataattcatctccctttg |
30255511 |
T |
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