View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12698_low_28 (Length: 238)
Name: NF12698_low_28
Description: NF12698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12698_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 44926311 - 44926517
Alignment:
| Q |
11 |
ccagaagggtgaaactagcgacaatgataataagaagactacaaaagaatcaaagaaggttttgtcaaatatataatttcatcttttatgtttaactcat |
110 |
Q |
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| T |
44926311 |
ccagaagggtgaaagtagcgataatgataataagaagactacaaaagaatcaaagaaggttt-gtcaaatatataatttcatcttttatgtttaactcat |
44926409 |
T |
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| Q |
111 |
ttctgtttgttttgcattgtggcttatttatgcatgcttgcaggaagttcctcctgacaatgcctttgagaagaacataagacgagagcttatctctcca |
210 |
Q |
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| T |
44926410 |
ttctgtttgttttgcattgcggcttatttatgcatacttgcaggaagttcctcctgacaatgcctttgagaagaacataagacgagagcttatctctgca |
44926509 |
T |
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| Q |
211 |
aacgagat |
218 |
Q |
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|||||||| |
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| T |
44926510 |
aacgagat |
44926517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 79 - 218
Target Start/End: Original strand, 44934824 - 44934957
Alignment:
| Q |
79 |
atatataatttcatcttttatgtttaactcatttctgtttgttttgcattgtggcttatttatgcatgcttgcaggaagttcctcctgacaatgcctttg |
178 |
Q |
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| T |
44934824 |
atatataagttcagcttttatgtttaacttgtttccgtttgttttgcattgctgctaatttatgcatgcttgcag--ag----tcctgacaatgcctttg |
44934917 |
T |
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| Q |
179 |
agaagaacataagacgagagcttatctctccaaacgagat |
218 |
Q |
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| T |
44934918 |
aggaatgcataagacaagagcttatccctgcaaacgagat |
44934957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 95 - 218
Target Start/End: Original strand, 45988220 - 45988343
Alignment:
| Q |
95 |
tttatgtttaactcatttctgtttgttttgcattgtggcttatttatgcatgcttgcaggaagttcctcctgacaatgcctttgagaagaacataagacg |
194 |
Q |
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| T |
45988220 |
tttatgtttaacttgtttctgtttgttttgtattgctgttaatttatgcatgcttgcagaaacttcatcctgacaatgcctttgaggaatgcataagaca |
45988319 |
T |
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| Q |
195 |
agagcttatctctccaaacgagat |
218 |
Q |
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| T |
45988320 |
agagcttatccctgcaaatgagat |
45988343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 44934488 - 44934554
Alignment:
| Q |
11 |
ccagaagggtgaaactagcgacaatgataataagaagactacaaaagaatcaaagaaggttttgtcaa |
78 |
Q |
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| T |
44934488 |
ccaggagggtgaaagtagcgagaaggataacaagaagactaaaaaagaatcaaa-aagggtttgtcaa |
44934554 |
T |
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