View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12698_low_29 (Length: 226)
Name: NF12698_low_29
Description: NF12698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12698_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 21643946 - 21644135
Alignment:
| Q |
11 |
gtgtctggaatgggtggatgtggtgagaaggcctaggaatcaaatatgttcgacaaggtaatatctatcacagcgtctcaaactcaaaatattagagaca |
110 |
Q |
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| T |
21643946 |
gtgtatggaatgggtggatgtggtgagaaggcctaggaatcaaatatgttcgacaaggtaatatctatcacagcgtctcaaactcaaaatattagagaca |
21644045 |
T |
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| Q |
111 |
ttcatggaaaaatggcagacatgttacacttgaaactcaatgaagaaagcgaagagggaagagcacagcggttgtggttgagtttgacag |
200 |
Q |
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| T |
21644046 |
ttcatggaaaaatggcagacatgttaaacttgaaactcaatgaagaaagcgaagagggaagagcacaacggttgtggttgagtttgacag |
21644135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 11 - 200
Target Start/End: Original strand, 21622232 - 21622421
Alignment:
| Q |
11 |
gtgtctggaatgggtggatgtggtgagaaggcctaggaatcaaatatgttcgacaaggtaatatctatcacagcgtctcaaactcaaaatattagagaca |
110 |
Q |
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| T |
21622232 |
gtgtatggaatgggtggatgtggtgagaaggcctaggaatcaaatatgttcgacaaggtaatatctatcacagcgtctcaaactcaaaatattagagata |
21622331 |
T |
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| Q |
111 |
ttcatggaaaaatggcagacatgttacacttgaaactcaatgaagaaagcgaagagggaagagcacagcggttgtggttgagtttgacag |
200 |
Q |
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| T |
21622332 |
ttcatggaaaaatggtagacatgttaaacttgaaactcaatgaagaaagcgaagagggaagagcacaacggttatggttgagtttgacag |
21622421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 36 - 197
Target Start/End: Complemental strand, 21715818 - 21715657
Alignment:
| Q |
36 |
agaaggcctaggaatcaaatatgttcgacaaggtaatatctatcacagcgtctcaaactcaaaatattagagacattcatggaaaaatggcagacatgtt |
135 |
Q |
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| T |
21715818 |
agaaggctcaggaatcaaatatgttcgataaggtaatatctatcacagtgtctcaaactcaaaatattagagacattcaaggaaaaatggcagacatgtt |
21715719 |
T |
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| Q |
136 |
acacttgaaactcaatgaagaaagcgaagagggaagagcacagcggttgtggttgagtttga |
197 |
Q |
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| T |
21715718 |
aaacttgaaactcaaggaagaaagcgaagagggaagagcacaacggttgtggttgagtttga |
21715657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 31 - 193
Target Start/End: Original strand, 21703692 - 21703854
Alignment:
| Q |
31 |
tggtgagaaggcctaggaatcaaatatgttcgacaaggtaatatctatcacagcgtctcaaactcaaaatattagagacattcatggaaaaatggcagac |
130 |
Q |
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| T |
21703692 |
tggtaagaaggctgaggaatcaaatatgttcgataaggttatcttaatcacagtgtctcaaactccaaacgttagaaaaattcaaggaaaaatggcagct |
21703791 |
T |
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| Q |
131 |
atgttacacttgaaactcaatgaagaaagcgaagagggaagagcacagcggttgtggttgagt |
193 |
Q |
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| T |
21703792 |
ttgttaaacttgaaactcagtgaagaagatgaagacgaaagagcacaacgtttgtggttgagt |
21703854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 195
Target Start/End: Original strand, 21115145 - 21115304
Alignment:
| Q |
36 |
agaaggcctaggaatcaaatatgttcgacaaggtaatatctatcacagcgtctcaaactcaaaatattagagacattcatggaaaaatggcagacatgtt |
135 |
Q |
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||||||| |||||| | ||||||| || ||||| ||||| ||||| | ||||||||| ||||||||||| |||||| |||||| | ||||| ||||| |
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| T |
21115145 |
agaaggctgaggaattagatatgtttgataaggttatatcaatcactgtcgctcaaactccaaatattagaggcattcagggaaaacttgcagatatgtt |
21115244 |
T |
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| Q |
136 |
acacttgaaactcaatgaagaaagcgaagagggaagagcacagcggttgtggttgagttt |
195 |
Q |
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| T |
21115245 |
aaacttgaaattggaggaagaaagtgaagagggaagagcacaacgtttatggttgtgttt |
21115304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 23010676 - 23010559
Alignment:
| Q |
80 |
acagcgtctcaaactcaaaatattagagacattcatggaaaaatggcagacatgttacacttgaaactcaatgaagaaagcgaagagggaagagcacagc |
179 |
Q |
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|||| ||||||||||| ||||||||||| ||||| |||||||| || || | || || ||||| | | |||||||| || |||||||||||||| | |
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| T |
23010676 |
acagtgtctcaaactcccaatattagagatattcaaggaaaaatagctgatgttttgaacatgaaattggaggaagaaagtgatgagggaagagcacaac |
23010577 |
T |
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| Q |
180 |
ggttgtggttgagtttga |
197 |
Q |
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| T |
23010576 |
gtttgtggttgagtttga |
23010559 |
T |
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