View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12698_low_31 (Length: 203)

Name: NF12698_low_31
Description: NF12698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12698_low_31
NF12698_low_31
[»] chr2 (16 HSPs)
chr2 (1-186)||(18779360-18779545)
chr2 (111-186)||(41643886-41643961)
chr2 (112-186)||(6177790-6177864)
chr2 (111-173)||(27138992-27139054)
chr2 (111-186)||(18947557-18947632)
chr2 (111-186)||(34441880-34441955)
chr2 (129-186)||(19073390-19073447)
chr2 (111-186)||(42005403-42005478)
chr2 (111-177)||(39788545-39788611)
chr2 (130-186)||(15650881-15650937)
chr2 (129-181)||(18059326-18059378)
chr2 (111-147)||(18514769-18514805)
chr2 (110-145)||(4763641-4763676)
chr2 (111-186)||(41713178-41713253)
chr2 (111-145)||(26357591-26357625)
chr2 (20-60)||(18789514-18789554)
[»] chr3 (12 HSPs)
chr3 (110-186)||(7568678-7568754)
chr3 (111-186)||(40640593-40640668)
chr3 (111-177)||(38392596-38392662)
chr3 (111-177)||(49359596-49359662)
chr3 (111-177)||(45879466-45879532)
chr3 (111-178)||(32180714-32180781)
chr3 (111-177)||(47930634-47930700)
chr3 (111-180)||(19606879-19606948)
chr3 (118-186)||(44880813-44880880)
chr3 (111-178)||(4556554-4556622)
chr3 (111-181)||(18272188-18272257)
chr3 (111-145)||(37157713-37157747)
[»] chr5 (11 HSPs)
chr5 (111-186)||(10237428-10237503)
chr5 (111-176)||(21320765-21320830)
chr5 (115-181)||(36055838-36055904)
chr5 (111-186)||(22616508-22616582)
chr5 (137-186)||(31878423-31878472)
chr5 (137-178)||(41417546-41417587)
chr5 (110-145)||(5748441-5748476)
chr5 (111-146)||(12910364-12910399)
chr5 (110-145)||(26317811-26317846)
chr5 (111-145)||(5112440-5112474)
chr5 (150-186)||(25653637-25653673)
[»] chr1 (8 HSPs)
chr1 (113-177)||(16127536-16127600)
chr1 (111-177)||(13876887-13876953)
chr1 (137-181)||(10758264-10758308)
chr1 (113-177)||(27118346-27118410)
chr1 (125-177)||(16132503-16132555)
chr1 (111-146)||(10182139-10182174)
chr1 (111-145)||(2959758-2959792)
chr1 (116-145)||(9903186-9903215)
[»] chr7 (11 HSPs)
chr7 (111-177)||(7742933-7742999)
chr7 (112-186)||(23402330-23402404)
chr7 (113-186)||(37854253-37854326)
chr7 (111-186)||(22955271-22955346)
chr7 (113-181)||(4618719-4618787)
chr7 (111-186)||(4902354-4902429)
chr7 (111-180)||(8133524-8133595)
chr7 (110-177)||(49002240-49002306)
chr7 (115-186)||(5781536-5781607)
chr7 (110-145)||(31520861-31520896)
chr7 (111-143)||(46481217-46481249)
[»] chr4 (8 HSPs)
chr4 (111-180)||(2704526-2704595)
chr4 (111-186)||(17612349-17612423)
chr4 (111-177)||(2266824-2266890)
chr4 (110-177)||(54995767-54995834)
chr4 (113-177)||(9743604-9743668)
chr4 (111-181)||(20097451-20097525)
chr4 (111-168)||(33255513-33255570)
chr4 (111-186)||(51204593-51204672)
[»] scaffold0200 (1 HSPs)
scaffold0200 (113-186)||(24776-24849)
[»] chr8 (5 HSPs)
chr8 (111-178)||(4108879-4108946)
chr8 (111-186)||(23176722-23176797)
chr8 (114-186)||(8151371-8151443)
chr8 (113-160)||(28220940-28220987)
chr8 (111-145)||(34894980-34895014)
[»] chr6 (6 HSPs)
chr6 (111-186)||(19631763-19631838)
chr6 (111-186)||(26301882-26301957)
chr6 (111-186)||(11084111-11084186)
chr6 (110-177)||(30338489-30338556)
chr6 (111-145)||(3005393-3005427)
chr6 (123-177)||(4102894-4102948)
[»] scaffold0312 (1 HSPs)
scaffold0312 (110-177)||(9099-9170)
[»] scaffold0050 (1 HSPs)
scaffold0050 (152-181)||(5645-5674)


Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 18779545 - 18779360
Alignment:
Q  1 aaacatgctaaaggggattgtaatcaggatagatgcgtttgtcactatataccggagtagataacaatatacattactcagattattataacgaaataaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  18779545 aaacatgctaaaggggattgtaatcaggatagatgcgtttgtcactatataccggagtagataacaatatacattactcagattattacaacgaaataaa 18779446  T
Q  101 agtttatgaatgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18779445 agtttatgaatgaagtcataaaaatgactttattgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcac 18779360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 41643886 - 41643961
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41643886 tgaagtcatgataatgacttttttggtgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcac 41643961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 6177790 - 6177864
Alignment:
Q  112 gaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    |||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6177790 gaagtcatgagaatgacttttctggtgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcac 6177864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 27139054 - 27138992
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatt 173  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  27139054 tgaagtcatgaaaatgacttttttgatgaagttaaatggccaatcattgatcatttgtgtatt 27138992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 18947632 - 18947557
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    ||||||||||||||| |||||| || |||||||||||||||||||||||| |||||||||||||||| ||| ||||    
T  18947632 tgaagtcatgaaaataacttttctggtgaagttaaatggtcaatcattgaacatttgtgtatttaatccatgtcac 18947557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 34441955 - 34441880
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    ||||||||||||||||||||||||| | ||||||||||  |||| |||||  ||||||||||||||||||| ||||    
T  34441955 tgaagtcatgaaaatgacttttttggtaaagttaaatgaccaattattgaatatttgtgtatttaattcatgtcac 34441880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 19073390 - 19073447
Alignment:
Q  129 ttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||| ||| ||||    
T  19073390 ttttttggtgaagttaaatggtcaatcattgagaatttgtgtatttaatccatgtcac 19073447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 42005403 - 42005478
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    ||||||||||||||||| ||||||| |||||||||||| |||| ||||||  |||||| |||||||| ||| ||||    
T  42005403 tgaagtcatgaaaatgatttttttggtgaagttaaatgatcaaccattgaatatttgtttatttaatccatgtcac 42005478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 39788611 - 39788545
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaat 177  Q
    ||||||||| | |||||||||| |  |||||| |||| |||||||||||||||||||||||||||||    
T  39788611 tgaagtcataagaatgacttttctagtgaagtcaaatagtcaatcattgagcatttgtgtatttaat 39788545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 15650881 - 15650937
Alignment:
Q  130 tttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    |||||||||||||||||| |||||||||| |  ||||||||||||||| ||| ||||    
T  15650881 tttttgatgaagttaaatcgtcaatcattaaatatttgtgtatttaatccatatcac 15650937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 18059378 - 18059326
Alignment:
Q  129 ttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcat 181  Q
    ||||||| ||| |||||||||||||| |||||  |||||||||||||||||||    
T  18059378 ttttttggtgatgttaaatggtcaattattgaatatttgtgtatttaattcat 18059326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 18514805 - 18514769
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaat 147  Q
    ||||||||||| |||||||||||||||||||||||||    
T  18514805 tgaagtcatgagaatgacttttttgatgaagttaaat 18514769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 145
Target Start/End: Original strand, 4763641 - 4763676
Alignment:
Q  110 atgaagtcatgaaaatgacttttttgatgaagttaa 145  Q
    ||||||||||||||||||||||| ||||||||||||    
T  4763641 atgaagtcatgaaaatgacttttctgatgaagttaa 4763676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 41713178 - 41713253
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    |||| |||||||||||| |||| || |||| |||||||  ||||||||||  |||| |||||||||||||| ||||    
T  41713178 tgaaatcatgaaaatgatttttctggtgaaattaaatgaccaatcattgaatatttatgtatttaattcatgtcac 41713253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 26357591 - 26357625
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaa 145  Q
    |||||||||||||||||||||| ||||||||||||    
T  26357591 tgaagtcatgaaaatgacttttctgatgaagttaa 26357625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 18789554 - 18789514
Alignment:
Q  20 gtaatcaggatagatgcgtttgtcactatataccggagtag 60  Q
    |||||| |||||||||| ||||||||||| |||||||||||    
T  18789554 gtaatccggatagatgcatttgtcactatgtaccggagtag 18789514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 7568754 - 7568678
Alignment:
Q  110 atgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    |||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  7568754 atgaagtcatgaaaattacttttttggtgaagttaaatggtaaatcattgagcatttgtgtatttaattcatgtcac 7568678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 40640668 - 40640593
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    ||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  40640668 tgaagtcatgagaatgacttttctggtgaagttaaatggtcaatcattgagcatttgtgtatttaatccatgtcac 40640593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 38392662 - 38392596
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaat 177  Q
    ||||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||    
T  38392662 tgaagtcatgagaatgacttttttggtgaagttaaatggtcagtcattgaacatttgtgtatttaat 38392596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 49359662 - 49359596
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaat 177  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||||||||    
T  49359662 tgaagtcatgaaaatgactttttttgtgaagttaaatggccaatcattgaacatttgtgtatttaat 49359596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 45879532 - 45879466
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaat 177  Q
    ||||||||||| |||||||||| || | ||||||||||| |||||||||||||||||||||||||||    
T  45879532 tgaagtcatgagaatgacttttctggtaaagttaaatggccaatcattgagcatttgtgtatttaat 45879466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 32180781 - 32180714
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaatt 178  Q
    |||||| |||| |||||||||| |  |||||||||||||| |||||||||||||||||||||||||||    
T  32180781 tgaagttatgagaatgacttttctagtgaagttaaatggttaatcattgagcatttgtgtatttaatt 32180714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 47930700 - 47930634
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaat 177  Q
    ||||||||||||||||| |||| || ||||||||||||  |||||||||| ||||||||||||||||    
T  47930700 tgaagtcatgaaaatgatttttctggtgaagttaaatgaccaatcattgaacatttgtgtatttaat 47930634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 19606948 - 19606879
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattca 180  Q
    |||||| || |||||||||||| || ||||||||||||  |||| |||||||||||||||||||||||||    
T  19606948 tgaagttataaaaatgacttttctggtgaagttaaatgaccaatgattgagcatttgtgtatttaattca 19606879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 44880813 - 44880880
Alignment:
Q  118 atgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    ||||||||||||||||  ||||||||||||||||||||||||| ||||| |||||||||| ||| ||||    
T  44880813 atgaaaatgacttttta-atgaagttaaatggtcaatcattgaacatttatgtatttaatccatgtcac 44880880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 4556554 - 4556622
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaa-atggtcaatcattgagcatttgtgtatttaatt 178  Q
    |||||||||||||||||||||| |  ||||||||  |||  ||||||||||| ||||||||||||||||    
T  4556554 tgaagtcatgaaaatgacttttctcgtgaagttactatgaccaatcattgagtatttgtgtatttaatt 4556622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 18272257 - 18272188
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcat 181  Q
    ||||||||||| |||||||||| | |||| ||||| |   |||||||||| ||||||||||||||||||||    
T  18272257 tgaagtcatgagaatgacttttctaatgacgttaactcc-caatcattgaacatttgtgtatttaattcat 18272188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 37157713 - 37157747
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaa 145  Q
    |||||||||||||||| ||||||||||||||||||    
T  37157713 tgaagtcatgaaaatggcttttttgatgaagttaa 37157747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 8e-26; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 10237428 - 10237503
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10237428 tgaagtcatgaaaatgacttttctagtgaagttaaatggtcaatcattgagcatttgtgtatttaattcatttcac 10237503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 21320765 - 21320830
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaa 176  Q
    |||||| || |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  21320765 tgaagtaataaaaatgacttttttgatgaagttaaatgatcaatcattgagcattcgtgtatttaa 21320830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 36055904 - 36055838
Alignment:
Q  115 gtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcat 181  Q
    ||||||| |||||||||| |  ||||||||||||||||||||||||||||||||| |||||||||||    
T  36055904 gtcatgagaatgacttttcttgtgaagttaaatggtcaatcattgagcatttgtgaatttaattcat 36055838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 22616508 - 22616582
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    |||||||||||||||||||||| || ||||||||||||| ||||||||||||| || |||||||||| ||| ||||    
T  22616508 tgaagtcatgaaaatgacttttctggtgaagttaaatggccaatcattgagca-ttatgtatttaatccatgtcac 22616582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 31878423 - 31878472
Alignment:
Q  137 tgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    ||||||||||| |||||||||| |||||||||||||||||||||| ||||    
T  31878423 tgaagttaaattgtcaatcattaagcatttgtgtatttaattcatgtcac 31878472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 41417587 - 41417546
Alignment:
Q  137 tgaagttaaatggtcaatcattgagcatttgtgtatttaatt 178  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  41417587 tgaagttaaatggttaatcattgaacatttgtgtatttaatt 41417546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 145
Target Start/End: Original strand, 5748441 - 5748476
Alignment:
Q  110 atgaagtcatgaaaatgacttttttgatgaagttaa 145  Q
    |||||||||||||||||||||||||| |||||||||    
T  5748441 atgaagtcatgaaaatgacttttttggtgaagttaa 5748476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 146
Target Start/End: Original strand, 12910364 - 12910399
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaa 146  Q
    ||||||||||||||||||||||||| ||||||||||    
T  12910364 tgaagtcatgaaaatgacttttttggtgaagttaaa 12910399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 145
Target Start/End: Complemental strand, 26317846 - 26317811
Alignment:
Q  110 atgaagtcatgaaaatgacttttttgatgaagttaa 145  Q
    |||||||||||||||||||||||||| |||||||||    
T  26317846 atgaagtcatgaaaatgacttttttggtgaagttaa 26317811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 5112474 - 5112440
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaa 145  Q
    ||||||||||||||||||||||||| |||||||||    
T  5112474 tgaagtcatgaaaatgacttttttggtgaagttaa 5112440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 25653637 - 25653673
Alignment:
Q  150 tcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    |||||||||||| ||||||||||||||||||| ||||    
T  25653637 tcaatcattgagtatttgtgtatttaattcatatcac 25653673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 16127536 - 16127600
Alignment:
Q  113 aagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaat 177  Q
    |||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||    
T  16127536 aagtcatgaaaatgacttttctggtgaagttaaatggtcaatcattgatcatttgtgtatttaat 16127600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 13876953 - 13876887
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaat 177  Q
    |||||| ||||||||||||||| || |||||||||||| |||||||||||| |||||||||||||||    
T  13876953 tgaagttatgaaaatgacttttatggtgaagttaaatgatcaatcattgagtatttgtgtatttaat 13876887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 10758308 - 10758264
Alignment:
Q  137 tgaagttaaatggtcaatcattgagcatttgtgtatttaattcat 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  10758308 tgaagttaaatggtcaatcattgagcatttgtgtatttaattcat 10758264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 27118346 - 27118410
Alignment:
Q  113 aagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaat 177  Q
    ||||||||||||||||||||||||| ||||||||| || |||||| |||||||| ||||||||||    
T  27118346 aagtcatgaaaatgacttttttgataaagttaaatagttaatcatggagcatttatgtatttaat 27118410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 16132503 - 16132555
Alignment:
Q  125 tgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaat 177  Q
    ||||||||||| |||||||||||||  ||| ||||||||||||||||||||||    
T  16132503 tgacttttttggtgaagttaaatggcaaattattgagcatttgtgtatttaat 16132555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 146
Target Start/End: Complemental strand, 10182174 - 10182139
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaa 146  Q
    ||||||||||||||||||||||||| ||||||||||    
T  10182174 tgaagtcatgaaaatgacttttttggtgaagttaaa 10182139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 2959758 - 2959792
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaa 145  Q
    |||||||||||||||||||||| ||||||||||||    
T  2959758 tgaagtcatgaaaatgacttttctgatgaagttaa 2959792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 145
Target Start/End: Complemental strand, 9903215 - 9903186
Alignment:
Q  116 tcatgaaaatgacttttttgatgaagttaa 145  Q
    ||||||||||||||||||||||||||||||    
T  9903215 tcatgaaaatgacttttttgatgaagttaa 9903186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 111 - 177
Target Start/End: Original strand, 7742933 - 7742999
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaat 177  Q
    ||||||||| |||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||    
T  7742933 tgaagtcataaaaatgacttttttgatgaagtaaaatgatcaatcattgagtatttgtgtatttaat 7742999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 23402404 - 23402330
Alignment:
Q  112 gaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    |||||||||| |||||||||| || |||||||||||||||||||||||| ||| |||||||||||||||| ||||    
T  23402404 gaagtcatgagaatgacttttctggtgaagttaaatggtcaatcattgaacatctgtgtatttaattcatgtcac 23402330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 37854326 - 37854253
Alignment:
Q  113 aagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    ||||||||| |||||||||| || |||| ||||||||||||| |||||||||||||||||||||| ||| ||||    
T  37854326 aagtcatgagaatgacttttctggtgaaattaaatggtcaattattgagcatttgtgtatttaatccatgtcac 37854253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 22955346 - 22955271
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    |||||| |||| |||||||||| || |||||||||||||||||| ||||| |||||||||||||||| ||| ||||    
T  22955346 tgaagtaatgagaatgacttttctggtgaagttaaatggtcaattattgaacatttgtgtatttaatccatgtcac 22955271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 181
Target Start/End: Complemental strand, 4618787 - 4618719
Alignment:
Q  113 aagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcat 181  Q
    ||||||||||||||| ||||||| | ||||||||||   ||||||||| ||||||||||||||||||||    
T  4618787 aagtcatgaaaatgatttttttggtaaagttaaatgactaatcattgaacatttgtgtatttaattcat 4618719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 4902354 - 4902429
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    ||||||||||||||| | ||||||| |||| ||||||| ||||| ||||||||||| |||||||||| ||| ||||    
T  4902354 tgaagtcatgaaaataatttttttggtgaatttaaatgatcaattattgagcatttatgtatttaatccatgtcac 4902429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 8133595 - 8133524
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaa--tggtcaatcattgagcatttgtgtatttaattca 180  Q
    ||||||||| | ||| ||||||||| ||||||||||  || ||||||||| |||||||||||||||||||||    
T  8133595 tgaagtcataagaataacttttttggtgaagttaaaaatgatcaatcattaagcatttgtgtatttaattca 8133524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 49002240 - 49002306
Alignment:
Q  110 atgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaat 177  Q
    |||||||||||| ||||| |||||| ||||||| |||||  ||||||||||| |||||||||||||||    
T  49002240 atgaagtcatgataatgattttttt-atgaagtgaaatgaacaatcattgagtatttgtgtatttaat 49002306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 5781536 - 5781607
Alignment:
Q  115 gtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    ||||||||||||| |||| || | |||||||||| ||||||||| |  ||||||||||||||| ||| ||||    
T  5781536 gtcatgaaaatgatttttctggtaaagttaaatgatcaatcattaaatatttgtgtatttaatccatgtcac 5781607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 145
Target Start/End: Complemental strand, 31520896 - 31520861
Alignment:
Q  110 atgaagtcatgaaaatgacttttttgatgaagttaa 145  Q
    |||||||||||||||||||||||||| |||||||||    
T  31520896 atgaagtcatgaaaatgacttttttggtgaagttaa 31520861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 143
Target Start/End: Complemental strand, 46481249 - 46481217
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagtt 143  Q
    ||||||||||||||||||||||||| |||||||    
T  46481249 tgaagtcatgaaaatgacttttttggtgaagtt 46481217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 2704526 - 2704595
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattca 180  Q
    |||||||||||||||||||||| || |||||||||||| |||||||||||  ||||||||||||||||||    
T  2704526 tgaagtcatgaaaatgacttttctggtgaagttaaatgatcaatcattgaatatttgtgtatttaattca 2704595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 17612349 - 17612423
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    ||||||||||| ||||| |||||| ||||||||||||||||||||||| |||||||||||| ||||||||| ||||    
T  17612349 tgaagtcatgagaatgatttttttaatgaagttaaatggtcaatcattaagcatttgtgta-ttaattcatgtcac 17612423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 177
Target Start/End: Complemental strand, 2266890 - 2266824
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaat 177  Q
    ||||||||||| |||||||||| |  ||||||||||| |||||||||||||||||||||||||||||    
T  2266890 tgaagtcatgataatgacttttctagtgaagttaaatcgtcaatcattgagcatttgtgtatttaat 2266824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 54995834 - 54995767
Alignment:
Q  110 atgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaat 177  Q
    |||||||||||| ||||||||||||| ||||||||||||| |||||||||  |||||| |||||||||    
T  54995834 atgaagtcatgataatgacttttttggtgaagttaaatggccaatcattgtacatttgcgtatttaat 54995767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 9743604 - 9743668
Alignment:
Q  113 aagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaat 177  Q
    |||||||| |||||||||||||| |||| |||||||  |||| ||||| ||||||||||||||||    
T  9743604 aagtcatgtaaatgacttttttggtgaaattaaatgaccaattattgaacatttgtgtatttaat 9743668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 20097525 - 20097451
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaa----atggtcaatcattgagcatttgtgtatttaattcat 181  Q
    ||||||||||| |||||||||| || |||||||||    ||| |||||||||  |||||||||||||||||||||    
T  20097525 tgaagtcatgagaatgacttttctggtgaagttaaccctatgatcaatcattccgcatttgtgtatttaattcat 20097451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 33255513 - 33255570
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgt 168  Q
    |||||||| || ||| ||||||||| ||||||||||||| |||| |||||||||||||    
T  33255513 tgaagtcacgagaatcacttttttggtgaagttaaatggccaattattgagcatttgt 33255570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 51204593 - 51204672
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaa----atggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    ||||||||| |||||||||||| || |||||||||    ||| ||||| ||||||| |||||||||||||| ||| ||||    
T  51204593 tgaagtcataaaaatgacttttctggtgaagttaaccctatgatcaattattgagcttttgtgtatttaatccatgtcac 51204672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 24849 - 24776
Alignment:
Q  113 aagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    |||| |||| ||||| |||| || |||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  24849 aagttatgagaatgatttttctggtgaaattaaatggtcaatcattgagcatttgtgtatttaattcatgtcac 24776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 4108946 - 4108879
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaatt 178  Q
    ||||||||||||||||||||||||| | ||||||||||  ||||||||||  ||||||||||||||||    
T  4108946 tgaagtcatgaaaatgacttttttggtaaagttaaatgaccaatcattgaatatttgtgtatttaatt 4108879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 23176797 - 23176722
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    ||||||||||||||||||||||||| ||||||||||||  ||||||||||  ||||||||| ||||| ||| ||||    
T  23176797 tgaagtcatgaaaatgacttttttggtgaagttaaatgaccaatcattgaatatttgtgtacttaatgcatgtcac 23176722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 186
Target Start/End: Complemental strand, 8151443 - 8151371
Alignment:
Q  114 agtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||||  ||||||| ||||||| ||| ||||    
T  8151443 agtcatgaaaatgacttttttggtgaagttaaatgaccaatcattgaatatttgtgcatttaatccatgtcac 8151371  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 28220987 - 28220940
Alignment:
Q  113 aagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattga 160  Q
    |||||||||||||||||||| || ||||||||||||  ||||||||||    
T  28220987 aagtcatgaaaatgacttttctggtgaagttaaatgaccaatcattga 28220940  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 34894980 - 34895014
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaa 145  Q
    |||||||||||||||||||||| ||||||||||||    
T  34894980 tgaagtcatgaaaatgacttttctgatgaagttaa 34895014  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 19631763 - 19631838
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    ||||||||| | |||||||||| || ||||||||||||  |||||||||| |||||||||||||||| ||| ||||    
T  19631763 tgaagtcataagaatgacttttctggtgaagttaaatgaccaatcattgaacatttgtgtatttaatccatgtcac 19631838  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 26301957 - 26301882
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    ||||||||| ||||||| ||||||  ||||||||||||  ||||||||||  |||| |||||||||||||| ||||    
T  26301957 tgaagtcataaaaatgatttttttcgtgaagttaaatgaccaatcattgaatatttatgtatttaattcatgtcac 26301882  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 186
Target Start/End: Complemental strand, 11084186 - 11084111
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatctcac 186  Q
    ||||||||||||||| |||||| || | ||||||||||  ||||||||||  |||| |||||||||| ||| ||||    
T  11084186 tgaagtcatgaaaataacttttctggtaaagttaaatgaccaatcattgaatatttatgtatttaatccatgtcac 11084111  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 30338489 - 30338556
Alignment:
Q  110 atgaagtcatgaaaatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaat 177  Q
    |||||||  ||| ||||||||||||  |||||||||||| | ||||||||||||||| || |||||||    
T  30338489 atgaagttgtgagaatgacttttttagtgaagttaaatgattaatcattgagcatttatgcatttaat 30338556  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 3005427 - 3005393
Alignment:
Q  111 tgaagtcatgaaaatgacttttttgatgaagttaa 145  Q
    ||||||||||| |||||||||||||||||||||||    
T  3005427 tgaagtcatgagaatgacttttttgatgaagttaa 3005393  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 177
Target Start/End: Complemental strand, 4102948 - 4102894
Alignment:
Q  123 aatgacttttttgatgaagttaaatggtcaatcattgagcatttgtgtatttaat 177  Q
    ||||| ||||||| ||||||||||||   ||||||||| ||||||||||||||||    
T  4102948 aatgatttttttggtgaagttaaatgtctaatcattgaacatttgtgtatttaat 4102894  T

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Target: scaffold0312 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 177
Target Start/End: Complemental strand, 9170 - 9099
Alignment:
Q  110 atgaagtcatgaaaatgacttttttgatgaagtta----aatggtcaatcattgagcatttgtgtatttaat 177  Q
    ||||||| |||| ||||||||||||| |||||| |    |||| ||||||||||| ||||||||||||||||    
T  9170 atgaagttatgagaatgacttttttgctgaagtcatgagaatgatcaatcattgaacatttgtgtatttaat 9099  T

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Target: scaffold0050 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 181
Target Start/End: Original strand, 5645 - 5674
Alignment:
Q  152 aatcattgagcatttgtgtatttaattcat 181  Q
    ||||||||||||||||||||||||||||||    
T  5645 aatcattgagcatttgtgtatttaattcat 5674  T

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