View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12698_low_9 (Length: 443)

Name: NF12698_low_9
Description: NF12698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12698_low_9
NF12698_low_9
[»] chr7 (4 HSPs)
chr7 (17-153)||(25986774-25986910)
chr7 (317-433)||(25987777-25987887)
chr7 (215-283)||(25987281-25987351)
chr7 (320-433)||(7635102-7635215)
[»] chr2 (3 HSPs)
chr2 (317-433)||(2468052-2468167)
chr2 (320-433)||(12564608-12564721)
chr2 (256-287)||(2467724-2467755)
[»] chr1 (1 HSPs)
chr1 (320-433)||(13113255-13113368)
[»] chr3 (2 HSPs)
chr3 (317-433)||(1233463-1233579)
chr3 (329-433)||(47772378-47772482)
[»] chr4 (1 HSPs)
chr4 (317-432)||(43040947-43041062)
[»] chr6 (1 HSPs)
chr6 (320-433)||(17798526-17798639)
[»] chr8 (2 HSPs)
chr8 (317-433)||(35780579-35780694)
chr8 (320-433)||(25319871-25319984)


Alignment Details
Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 25986774 - 25986910
Alignment:
Q  17 acatatcccttctaccattacaccaagctaagtataaaaatcaggatgctaacattctagctaaaatggcacatgttgagaaaacataagtgcggataga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| ||||||    
T  25986774 acatatcccttctaccattacaccaagctaagtataaaaatcaggatgctaacattcgacctaaaatggcacttgttgagaaaacataagtgcagataga 25986873  T
Q  117 agtagtaccaaatgtaatcacgaccaaatcctgtaat 153  Q
    || |||||||||||||||||| |||||||||| ||||    
T  25986874 agaagtaccaaatgtaatcacaaccaaatcctataat 25986910  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 317 - 433
Target Start/End: Original strand, 25987777 - 25987887
Alignment:
Q  317 gtacatgggtactcggtgcgggaggcatatggcttcattactagtcatggggatcatttggacaagagtctcattgacaaggtgtggcacatgtacatac 416  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |      ||||||    
T  25987777 gtacatgggtactcggtgcgggaggcatatcgcttcattactagtcatggggatcatttggacaggagtctcgttgacaaggtgtgtc------acatac 25987870  T
Q  417 catcaaaggtgtctctg 433  Q
    |||||||||||||||||    
T  25987871 catcaaaggtgtctctg 25987887  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 25987281 - 25987351
Alignment:
Q  215 acattcaggaacactatta--tataaggatcttagttacggaagggctgtggtaccgtgttttaaaagcac 283  Q
    ||||||||||| |||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25987281 acattcaggaaaactattaattataaggatcttagttacggaagggttgtggtaccgtgttttaaaagcac 25987351  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 433
Target Start/End: Original strand, 7635102 - 7635215
Alignment:
Q  320 catgggtactcggtgcgggaggcatatggcttcattactagtcatggggatcatttggacaagagtctcattgacaaggtgtggcacatgtacataccat 419  Q
    ||||| || |||||||| ||||| ||  |||| |||||||||||||||||||| ||||| | || |||| | ||||| || ||||| | | |||||||      
T  7635102 catggatattcggtgcgagaggcctaccgctttattactagtcatggggatcacttggataggaatctcgtcgacaatgtttggcataggcacataccgg 7635201  T
Q  420 caaaggtgtctctg 433  Q
     |||||||||||||    
T  7635202 taaaggtgtctctg 7635215  T

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Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 317 - 433
Target Start/End: Original strand, 2468052 - 2468167
Alignment:
Q  317 gtacatgggtactcggtgcgggaggcatatggcttcattactagtcatggggatcatttggacaagagtctcattgacaaggtgtggcacatgtacatac 416  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||| ||||||||    
T  2468052 gtacatgggtattcggtgcgggaggcatatcgcttcattactagtcacggggatcatttggacaggagtctcgttgacaaggtgtggcacaggtacatac 2468151  T
Q  417 catcaaaggtgtctctg 433  Q
    || | ||||||||||||    
T  2468152 cagc-aaggtgtctctg 2468167  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 433
Target Start/End: Complemental strand, 12564721 - 12564608
Alignment:
Q  320 catgggtactcggtgcgggaggcatatggcttcattactagtcatggggatcatttggacaagagtctcattgacaaggtgtggcacatgtacataccat 419  Q
    ||||| || |||||||| ||||| ||| |||| |||||||||||||||||||| ||||| | ||||||| | ||||| || ||||  | | ||||| |      
T  12564721 catggatattcggtgcgagaggcctatcgctttattactagtcatggggatcacttggataggagtctcgtcgacaatgtttggcttaggcacatatcga 12564622  T
Q  420 caaaggtgtctctg 433  Q
    ||||||||||||||    
T  12564621 caaaggtgtctctg 12564608  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 287
Target Start/End: Original strand, 2467724 - 2467755
Alignment:
Q  256 gggctgtggtaccgtgttttaaaagcacgtta 287  Q
    ||||||||||||||||||||||||||||||||    
T  2467724 gggctgtggtaccgtgttttaaaagcacgtta 2467755  T

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Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 320 - 433
Target Start/End: Original strand, 13113255 - 13113368
Alignment:
Q  320 catgggtactcggtgcgggaggcatatggcttcattactagtcatggggatcatttggacaagagtctcattgacaaggtgtggcacatgtacataccat 419  Q
    ||||| || |||||||||||||||||| |||||||||||||||||||||||||||| |||| |||| || |||||||||| |||||||  ||||||||||    
T  13113255 catggttattcggtgcgggaggcatatcgcttcattactagtcatggggatcatttagacaggagtttcgttgacaaggtttggcacagttacataccat 13113354  T
Q  420 caaaggtgtctctg 433  Q
    ||||||||||||||    
T  13113355 caaaggtgtctctg 13113368  T

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Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 317 - 433
Target Start/End: Original strand, 1233463 - 1233579
Alignment:
Q  317 gtacatgggtactcggtgcgggaggcatatggcttcattactagtcatggggatcatttggacaagagtctcattgacaaggtgtggcacatgtacatac 416  Q
    |||||||| || |||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||  | |||||||||| |||||||  |||||||    
T  1233463 gtacatggttattcggtgcgggaggcatatcgcttcattactagtcatggggatcatttagacaggagttccgttgacaaggtttggcacagttacatac 1233562  T
Q  417 catcaaaggtgtctctg 433  Q
    || ||||||||||||||    
T  1233563 cagcaaaggtgtctctg 1233579  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 433
Target Start/End: Complemental strand, 47772482 - 47772378
Alignment:
Q  329 tcggtgcgggaggcatatggcttcattactagtcatggggatcatttggacaagagtctcattgacaaggtgtggcacatgtacataccatcaaaggtgt 428  Q
    |||||||||||||| ||| |||| |||||||||||||||||||| ||||| | ||||||| | ||||| || || || | | |||||||  |||||||||    
T  47772482 tcggtgcgggaggcctatcgctttattactagtcatggggatcacttggataggagtctcgtcgacaatgtttgtcataggcacataccggcaaaggtgt 47772383  T
Q  429 ctctg 433  Q
    |||||    
T  47772382 ctctg 47772378  T

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Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 317 - 432
Target Start/End: Original strand, 43040947 - 43041062
Alignment:
Q  317 gtacatgggtactcggtgcgggaggcatatggcttcattactagtcatggggatcatttggacaagagtctcattgacaaggtgtggcacatgtacatac 416  Q
    |||||||| || |||||||||||||||||| |||||||||||| ||||||||||||||| |||| ||||  | |||||||||| |||||||  |||||||    
T  43040947 gtacatggttattcggtgcgggaggcatatcgcttcattactaatcatggggatcatttagacaggagttccgttgacaaggtttggcacagttacatac 43041046  T
Q  417 catcaaaggtgtctct 432  Q
    |||| |||||||||||    
T  43041047 catccaaggtgtctct 43041062  T

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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 320 - 433
Target Start/End: Complemental strand, 17798639 - 17798526
Alignment:
Q  320 catgggtactcggtgcgggaggcatatggcttcattactagtcatggggatcatttggacaagagtctcattgacaaggtgtggcacatgtacataccat 419  Q
    ||||| || ||| |||||||||||||| |||||||||||||||||||||||||||| |||| | ||   | ||||||||| |||||||  ||||||||||    
T  17798639 catggttattcgatgcgggaggcatatcgcttcattactagtcatggggatcatttagacaggcgttcaaatgacaaggtttggcacagttacataccat 17798540  T
Q  420 caaaggtgtctctg 433  Q
    ||||||||||||||    
T  17798539 caaaggtgtctctg 17798526  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 317 - 433
Target Start/End: Complemental strand, 35780694 - 35780579
Alignment:
Q  317 gtacatgggtactcggtgcgggaggcatatggcttcattactagtcatggggatcatttggacaagagtctcattgacaaggtgtggcacatgtacatac 416  Q
    |||||||| || | |||||||||||||||| ||||||||||||||||| |||||||||| |||| ||||  | |||||||||| |||||||  |||||||    
T  35780694 gtacatggttatttggtgcgggaggcatatcgcttcattactagtcat-gggatcatttagacaggagttccgttgacaaggtttggcacagttacatac 35780596  T
Q  417 catcaaaggtgtctctg 433  Q
    |||| ||||||||||||    
T  35780595 catccaaggtgtctctg 35780579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 320 - 433
Target Start/End: Complemental strand, 25319984 - 25319871
Alignment:
Q  320 catgggtactcggtgcgggaggcatatggcttcattactagtcatggggatcatttggacaagagtctca-ttgacaaggtgtggcacatgtacatacca 418  Q
    ||||| || |||||||||||||||||| ||||||||  |||||||||||||||||| |||| |||| ||| | |||||||| |||||||  |||||||||    
T  25319984 catggttattcggtgcgggaggcatatcgcttcattgttagtcatggggatcatttagacaggagt-tcagtggacaaggtttggcacaattacatacca 25319886  T
Q  419 tcaaaggtgtctctg 433  Q
    |||||||||||||||    
T  25319885 tcaaaggtgtctctg 25319871  T

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