View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12699_high_4 (Length: 280)
Name: NF12699_high_4
Description: NF12699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12699_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 18233614 - 18233884
Alignment:
| Q |
1 |
aattacactgaattatgtcattttttctcaaattactatctgtgcgtctatgtatcagtatcagtgtcatgtccggtgtctgtgtttcataaaaagaaag |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18233614 |
aattacactgaattatgtcatttt--ctcaaattactatctgtgtgtctgtgtatcagtatcagtgtcatgtccggtgtctgtgtttcatagaaagaaag |
18233711 |
T |
|
| Q |
101 |
taaagagtgatagaaacacttactagtgagttcatcaagccacctcttgatactctcaaacgttcctctcctactaatatcataaacaacaagagcacca |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18233712 |
taaagagtaatagaaacacttactagtgagttcatcaagccacctcttgatactttcaaacgttcctctcctactaatatcataaacaacaagagcacca |
18233811 |
T |
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| Q |
201 |
aaagcaccacgataataagcagaagtaacagctctaaacctttcttgtccagcagtatcccagatctgtgctt |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18233812 |
aaagcaccacgataataagcagaagtaacagctctaaacctttcttgtccagcagtatcccagatctgtgctt |
18233884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 176 - 273
Target Start/End: Complemental strand, 264440 - 264343
Alignment:
| Q |
176 |
aatatcataaacaacaagagcaccaaaagcaccacgataataagcagaagtaacagctctaaacctttcttgtccagcagtatcccagatctgtgctt |
273 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| | ||| | |||||| |||||||||||||| ||||| |||| |
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| T |
264440 |
aatatcataaacaataagagcaccaacagcaccacgataataagcagaagtaacagcacgaaaacgttcttgaccagcagtatcccaaatctgagctt |
264343 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 48931896 - 48931859
Alignment:
| Q |
236 |
aaacctttcttgtccagcagtatcccagatctgtgctt |
273 |
Q |
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| T |
48931896 |
aaacctttcttggccagcagtatcccagatctgagctt |
48931859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Original strand, 34995353 - 34995414
Alignment:
| Q |
212 |
ataataagcagaagtaacagctctaaacctttcttgtccagcagtatcccagatctgtgctt |
273 |
Q |
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|||||| ||||||||||||||||| ||||| ||||| ||||| || ||||| ||||| |||| |
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| T |
34995353 |
ataatatgcagaagtaacagctctgaacctctcttgcccagctgtgtcccatatctgcgctt |
34995414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 9527577 - 9527613
Alignment:
| Q |
237 |
aacctttcttgtccagcagtatcccagatctgtgctt |
273 |
Q |
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||||||||||| |||||||||||||||||||| |||| |
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| T |
9527577 |
aacctttcttggccagcagtatcccagatctgagctt |
9527613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 24906317 - 24906358
Alignment:
| Q |
1 |
aattacactgaattatgtcattttttctcaaattactatctgtg |
44 |
Q |
| |
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||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
24906317 |
aattacactgaattatgtcattttt--tcaaattattatctgtg |
24906358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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