View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12699_high_5 (Length: 249)
Name: NF12699_high_5
Description: NF12699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12699_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 41496212 - 41496446
Alignment:
| Q |
4 |
aggttccgtttgtcagacataatttaggctgatgcaattgaagagttagaaaaagttatgtttcatttttgtccacagaaaagttcttatttaaccacga |
103 |
Q |
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| T |
41496212 |
aggttccgtttgtcagacataatttaggctgatgcaattgaagagttataaaaagttatgtttcatttttgtccacagaaaagttcttatttaaccacga |
41496311 |
T |
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| Q |
104 |
caaaagtagtgttataccaatatgattcaaaatcattaattgattttcaattcatatagcctttctctacctgtagatgttattatcaaactgctttttg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41496312 |
caaaagtagtgttataccaatatgattcaaaatcattaattgattttcaattcatatagcctttctctacctgtagatgttattatcaaactgctttttg |
41496411 |
T |
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| Q |
204 |
ttatactcacatttccttttccatgatttgatgtc |
238 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
41496412 |
ttatactcacatttccttttccatgatttggtgtc |
41496446 |
T |
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