View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12699_low_4 (Length: 363)
Name: NF12699_low_4
Description: NF12699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12699_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 107 - 354
Target Start/End: Complemental strand, 47909330 - 47909083
Alignment:
| Q |
107 |
ggttcagtggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagcatataataaatat |
206 |
Q |
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| T |
47909330 |
ggttcaatggggtggacaagtatttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagcatataataaatat |
47909231 |
T |
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| Q |
207 |
aagcacgcatgctatatgggcgctgtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctgagtgtt |
306 |
Q |
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| T |
47909230 |
aagcacgcatgctatatgggcgcagtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctgagtgtt |
47909131 |
T |
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| Q |
307 |
acagtgccctaaatattgctccatatggaaaagaccctgtgttcttct |
354 |
Q |
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| T |
47909130 |
acagtgccctaaatattgctccatatggaaaagaccctgtgttcttct |
47909083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 47918599 - 47918252
Alignment:
| Q |
1 |
tcatttaggataattctggaaactggtggcttaaagtgaagaataacattcctgtaggttattggccaaaagagttagtgagtaacctacaatgttctgc |
100 |
Q |
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| T |
47918599 |
tcatttaggataattctggaaactggtggcttaaagtgaagaataacattcctgtaggttattggccaaaagagttagtgagtaacctacaaagttctgc |
47918500 |
T |
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| Q |
101 |
atcattggttcagtggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagcatataat |
200 |
Q |
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| T |
47918499 |
atcattggttcaatggggtggacaagtgtttagttatgaggtcaa---aaaaactcctcacactggaacacaaatgggtagtggagaagaagcatataat |
47918403 |
T |
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| Q |
201 |
aaatataagcacgcatgctatatgggcgctgtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctg |
300 |
Q |
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| T |
47918402 |
aaatttggggttgcatgttacatgggtggtgtgagaatcaaagataattcgcaagcacttaagtacccatcatttgtaagtacacatgctatagaaccat |
47918303 |
T |
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| Q |
301 |
agtgttacagtgccctaaatattgctccatatggaaaagaccctgtgttct |
351 |
Q |
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| T |
47918302 |
attgttacagtgccttcaatgatgctccatatggaaaagatcctgtattct |
47918252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 3 - 351
Target Start/End: Complemental strand, 47928362 - 47928014
Alignment:
| Q |
3 |
atttaggataattctggaaactggtggcttaaagtgaagaataacattcctgtaggttattggccaaaagagttagtgagtaacctacaatgttctgcat |
102 |
Q |
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| T |
47928362 |
atttaggataatgcccaaaactggtggtttaaagtgaagaataacatccctgtaggttattggccagcagagttattaggtaatttaagacacagtgcaa |
47928263 |
T |
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| Q |
103 |
cattggttcagtggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagcatataataa |
202 |
Q |
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| T |
47928262 |
cattgattcaatggggtggacaagtgtttagttatgaggtcaaaacaaaacctcctcacacaggaacacagatgggtagtggagatgcagcaagtggtcg |
47928163 |
T |
|
| Q |
203 |
atataagcacgcatgctatatgggcgctgtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctgag |
302 |
Q |
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| T |
47928162 |
atttggggccgcatgttacatgggtagtgtgagaattaaagattattcacaagctcttaagtatccatcatttgtaagtacacatgctgcagaaccatat |
47928063 |
T |
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| Q |
303 |
tgttacagtgccctaaatattgctccatatggaaaagaccctgtgttct |
351 |
Q |
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| T |
47928062 |
tgttacagtgccctcaatgacgctccatatggaaaagatcctgtattct |
47928014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 194
Target Start/End: Complemental strand, 47946920 - 47946747
Alignment:
| Q |
21 |
aactggtggcttaaagtgaagaataacattcctgtaggttattggccaaaagagttagtgagtaacctacaatgttctgcatcattggttcagtggggtg |
120 |
Q |
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||||||||||||| | ||||| |||| || |||||||||||||||| || | ||||| ||||| ||||| | |||| |||||||||| ||||||| |
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| T |
47946920 |
aactggtggcttagaatgaaggataaaatcattgtaggttattggccagcagcgatagtgggtaacttacaacatagtgcaacattggttcaatggggtg |
47946821 |
T |
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| Q |
121 |
gacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagca |
194 |
Q |
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| T |
47946820 |
gacaagtgtttagttataatgtgaaaacaacccctcctcacacaggaacacaaatgggtagtggagaagcagca |
47946747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 194
Target Start/End: Complemental strand, 47935701 - 47935605
Alignment:
| Q |
98 |
tgcatcattggttcagtggggtggacaagtgtttagttatgcggttaaaacaaaacctcctcacacaggaacacaaatggggagtggagaagaagca |
194 |
Q |
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|||| |||||||||| ||||| |||||||||||||||||| ||| ||||| | |||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
47935701 |
tgcaacattggttcaatggggaggacaagtgtttagttatcaggtcaaaactacccctcctcacacaggaacacagatgggtagtggagaagaagca |
47935605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 352
Target Start/End: Complemental strand, 47946711 - 47946589
Alignment:
| Q |
230 |
tgtgagaattaaagattactcacaagctcttaagtacccacaattcgtaaccacacatgctggagagcctgagtgttacagtgccctaaatattgctcca |
329 |
Q |
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|||||||||||| ||||| ||| || |||| ||||| |||||||| |||| ||| |||| | ||| ||| | |||||||||||||| || || || | |
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| T |
47946711 |
tgtgagaattaaggattattcagaaactctcaagtatccacaatttgtaagtacatatgcagcagaaccttactgttacagtgccctcaacgatgttcaa |
47946612 |
T |
|
| Q |
330 |
tatggaaaagaccctgtgttctt |
352 |
Q |
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| T |
47946611 |
tatggaaaagatcctgtcttctt |
47946589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 47909417 - 47909369
Alignment:
| Q |
20 |
aaactggtggcttaaagtgaagaataacattcctgtaggttattggcca |
68 |
Q |
| |
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|||||||||||||||| | |||||||| || || ||||||||||||||| |
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| T |
47909417 |
aaactggtggcttaaaattaagaataatataccagtaggttattggcca |
47909369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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