View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12699_low_5 (Length: 283)
Name: NF12699_low_5
Description: NF12699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12699_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 47909396 - 47909667
Alignment:
| Q |
1 |
cttaattttaagccaccagttttggttattatcctaaatcaaacaaacatattaagagaaattaaaattacaattat----catgtactataatattagt |
96 |
Q |
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| T |
47909396 |
cttaattttaagccaccagttttggttattatcctaaatcaaacaaacatattaagagaaattaaaattacaattatatatcatgtagtataatattagt |
47909495 |
T |
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| Q |
97 |
gagagcatgcatatttgtgtcatattattacctgaaatattccaacgtttatttcatattgttgtccaaaagggattgaaataggtgctaagatagcacc |
196 |
Q |
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| T |
47909496 |
gagagcatgcatatttgtgtcatattattacctgaaatattccaacgtttatttcatattgttgtccaaaagggattgaaataggtgctaagatagcacc |
47909595 |
T |
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| Q |
197 |
aagcgctacatccttatttgtttgcacaaaacccttgcaagtaagatcaaagcaacctgttgacttatatgt |
268 |
Q |
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| T |
47909596 |
aagcgctacatccttatttgtttgcacaaaacccttgcaagtaagatcaaagcaacctgttgacttgtatgt |
47909667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 123 - 268
Target Start/End: Original strand, 47919317 - 47919462
Alignment:
| Q |
123 |
attacctgaaatattccaacgtttatttcatattgttgtccaaaagggattgaaataggtgctaagatagcaccaagcgctacatccttatttgtttgca |
222 |
Q |
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| T |
47919317 |
attacccgaaatattccaacgttgatttcatattgttggtgagaagggactgaaacaggtcctagggtagcaccaagcgctatatccttgtttgtttgca |
47919416 |
T |
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| Q |
223 |
caaaacccttgcaagtaagatcaaagcaacctgttgacttatatgt |
268 |
Q |
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| T |
47919417 |
caaaacccttgcaagtaagatcaaaacatcctgttgacttgtatgt |
47919462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 268
Target Start/End: Original strand, 47928432 - 47928580
Alignment:
| Q |
120 |
attattacctgaaatattccaacgtttatttcatattgttgtccaaaagggattgaaataggtgctaagatagcaccaagcgctacatccttatttgttt |
219 |
Q |
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| T |
47928432 |
attattacctgaaatattccaacattgatttcatattgttgttgatgaggggatgaaacaggtcctagggtagcaccaagggctatacccttgtttgttt |
47928531 |
T |
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| Q |
220 |
gcacaaaacccttgcaagtaagatcaaagcaacctgttgacttatatgt |
268 |
Q |
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| T |
47928532 |
gcacaaaaccatgacatgtaagatcaaagcagcctgttgacttgtatgt |
47928580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 47928330 - 47928397
Alignment:
| Q |
7 |
tttaagccaccagttttggttattatcctaaatcaaacaaacatattaagagaaattaaaattacaat |
74 |
Q |
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| T |
47928330 |
tttaaaccaccagttttgggcattatcctaaatcaagccaacatattaagagaaattaaaataacaat |
47928397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 47941063 - 47941107
Alignment:
| Q |
217 |
tttgcacaaaacccttgcaagtaagatcaaagcaacctgttgact |
261 |
Q |
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| T |
47941063 |
tttgcacaaaaccactacaggtaagatcaaagcaacctgttgact |
47941107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 47947013 - 47947053
Alignment:
| Q |
120 |
attattacctgaaatattccaacgtttatttcatattgttg |
160 |
Q |
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| T |
47947013 |
attattacccaaaatattccaacgttgatttcatattgttg |
47947053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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