View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1269_low_1 (Length: 590)

Name: NF1269_low_1
Description: NF1269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1269_low_1
NF1269_low_1
[»] chr1 (9 HSPs)
chr1 (304-586)||(25580408-25580682)
chr1 (29-312)||(25580824-25581106)
chr1 (263-385)||(27262738-27262860)
chr1 (325-388)||(2507047-2507110)
chr1 (286-385)||(7444932-7445030)
chr1 (305-405)||(49805943-49806043)
chr1 (271-339)||(26761208-26761277)
chr1 (263-332)||(44529251-44529320)
chr1 (304-385)||(50015551-50015632)
[»] chr8 (4 HSPs)
chr8 (305-387)||(39900257-39900337)
chr8 (304-388)||(43471358-43471442)
chr8 (280-329)||(41657641-41657690)
chr8 (302-371)||(42964818-42964887)
[»] chr6 (3 HSPs)
chr6 (297-387)||(342976-343066)
chr6 (297-387)||(2801303-2801394)
chr6 (263-327)||(30326668-30326732)
[»] chr3 (7 HSPs)
chr3 (307-385)||(24487773-24487851)
chr3 (296-385)||(31732069-31732158)
chr3 (304-377)||(53248642-53248715)
chr3 (286-376)||(42461305-42461395)
chr3 (302-378)||(31752691-31752766)
chr3 (305-381)||(43767326-43767402)
chr3 (302-383)||(50037194-50037275)
[»] chr5 (6 HSPs)
chr5 (272-385)||(41360883-41360996)
chr5 (284-371)||(6562644-6562730)
chr5 (314-385)||(9784386-9784452)
chr5 (270-339)||(907369-907438)
chr5 (285-330)||(33338880-33338925)
chr5 (304-372)||(19608811-19608879)
[»] chr4 (7 HSPs)
chr4 (272-383)||(5497749-5497860)
chr4 (297-371)||(46695633-46695707)
chr4 (302-379)||(37626974-37627051)
chr4 (263-332)||(42098915-42098984)
chr4 (284-370)||(18915551-18915636)
chr4 (297-329)||(11123491-11123523)
chr4 (297-397)||(26009663-26009762)
[»] chr2 (4 HSPs)
chr2 (263-372)||(37744013-37744122)
chr2 (349-393)||(26489332-26489376)
chr2 (314-385)||(38788768-38788839)
chr2 (297-389)||(1944768-1944860)
[»] chr7 (3 HSPs)
chr7 (297-400)||(35116887-35116989)
chr7 (272-386)||(47188422-47188535)
chr7 (284-372)||(43638973-43639062)
[»] scaffold0392 (1 HSPs)
scaffold0392 (360-405)||(13664-13709)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-104; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 304 - 586
Target Start/End: Complemental strand, 25580682 - 25580408
Alignment:
Q  304 tattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttttgaatctttaacaaatacacttgttagcaaga 403  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  25580682 tattcaacatattaaaacatcaaaaagtagatttttctacatactaattatcaattatttccattttttgaatctttaacaagtacacttgttagcaaaa 25580583  T
Q  404 ccttattttttaatgtaaatgttgtttagtcatgttagttttcagagtttaaagtttaaaccatgaacttcgtagttaatactactttgatttctcttaa 503  Q
    || ||||||||||||||||||||||||||||||||||||||||||         ||||||||||  ||||| ||||||||||||||||||||||||||||    
T  25580582 ccctattttttaatgtaaatgttgtttagtcatgttagttttcag-------gatttaaaccatagacttcatagttaatactactttgatttctcttaa 25580490  T
Q  504 ctcagctaaccaaattaccaaactatctactttagtgttgagggttatcccttaactcaccaatcgagctagaattatctacc 586  Q
    ||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  25580489 ct-tgctaaccaaattaccaaactatctacgttagtgttgagggttatcccttaactcaccaatcgagctagagctatctacc 25580408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 29 - 312
Target Start/End: Complemental strand, 25581106 - 25580824
Alignment:
Q  29 agtaatggggtaggtcatcaagatgagggtccaatggctcaactgaaattacatacaatttaggtcgatttcataagggaaatgagaaggaattaagaga 128  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25581106 agtaatggggtaggtcatcaagaggagggtccaatggctcaactgaaattacatacaatttaggtcgatttcataagggaaatgaaaaggaattaagaga 25581007  T
Q  129 agaaagggcctccctca-tcacttttgggcatcaactaactgaacatagactnnnnnnntactagaaggggtttatttagctaaagactnnnnnnntaag 227  Q
    ||||||||||| ||||| |||||||||||||| |||||||||||||||||||       ||||||||||||||||||||||||||||||       || |    
T  25581006 agaaagggccttcctcattcacttttgggcataaactaactgaacatagact--aaaaatactagaaggggtttatttagctaaagactaaaaaaatatg 25580909  T
Q  228 taacaaaagataagcctaaaagatatannnnnnnagataagtagtttaaaacggagattttat-tttaagatttctgtattcaaca 312  Q
    |||||||||||||||||||||||||||       ||||||| ||||||||| ||| ||||||| ||||||||||||||||||||||    
T  25580908 taacaaaagataagcctaaaagatata-ttttttagataagaagtttaaaatggatattttatctttaagatttctgtattcaaca 25580824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 263 - 385
Target Start/End: Complemental strand, 27262860 - 27262738
Alignment:
Q  263 gataagtagtttaaaacggagattttattttaagatttctgtattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatt 362  Q
    |||||| ||||||||| ||| ||||| | |||  |||| ||||||||||| |||||||||| ||||||||  ||||| ||||||  ||||||||||| ||    
T  27262860 gataagaagtttaaaatggaaattttgtcttagaatttgtgtattcaacacattaaaacattaaaaagtaattttttctacataaaagttatcaattgtt 27262761  T
Q  363 tccattttttgaatctttaacaa 385  Q
    || |||||||||||| |||||||    
T  27262760 tctattttttgaatccttaacaa 27262738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 325 - 388
Target Start/End: Original strand, 2507047 - 2507110
Alignment:
Q  325 aaaaagtagatttttatacatactagttatcaattatttccattttttgaatctttaacaaata 388  Q
    ||||||||  |||||||| |||  | |||||||||||||| |||||||||||||||||||||||    
T  2507047 aaaaagtaattttttatatataaaatttatcaattatttctattttttgaatctttaacaaata 2507110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 286 - 385
Target Start/End: Original strand, 7444932 - 7445030
Alignment:
Q  286 tttattttaagatttctgtattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttttgaatctttaacaa 385  Q
    ||||| || |||||| ||||||||||| ||| ||| ||||||||| |  |||||||||||   |||||||||||||||| | |||| |||||||||||||    
T  7444932 tttatcttgagatttgtgtattcaacacattgaaatatcaaaaagcaactttttatacatgaaagttatcaattatttcta-ttttagaatctttaacaa 7445030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 405
Target Start/End: Complemental strand, 49806043 - 49805943
Alignment:
Q  305 attcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttttgaatctttaacaaatacacttgttagcaagac 404  Q
    |||||||| ||||||| || ||||||||  ||||| ||||||  |||||| |||| |||| ||||||| |||||||||||  | | ||||||| ||||||    
T  49806043 attcaacacattaaaatataaaaaagtaactttttctacataaaagttataaattgtttctattttttaaatctttaacatgtgcccttgttaacaagac 49805944  T
Q  405 c 405  Q
    |    
T  49805943 c 49805943  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 339
Target Start/End: Complemental strand, 26761277 - 26761208
Alignment:
Q  271 gtttaaaacggagattttattttaagatttctgtattcaacatattaaaacatc-aaaaagtagattttt 339  Q
    |||||||| | | ||||||| |||| |||| ||||||||||| ||||||||||| |||||||| ||||||    
T  26761277 gtttaaaatgaaaattttatcttaaaatttgtgtattcaacacattaaaacatcgaaaaagtaaattttt 26761208  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 332
Target Start/End: Original strand, 44529251 - 44529320
Alignment:
Q  263 gataagtagtttaaaacggagattttattttaagatttctgtattcaacatattaaaacatcaaaaagta 332  Q
    |||||| ||||||||  |||  |||||| |||| | || |||||||||||||||||||||| ||||||||    
T  44529251 gataagaagtttaaagtggaagttttatcttaaaagttgtgtattcaacatattaaaacattaaaaagta 44529320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 50015632 - 50015551
Alignment:
Q  304 tattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttttgaatctttaacaa 385  Q
    ||||||||| ||| ||| |||||||||||  |||||||||| |  | ||||||||| |||| |||||||||||  |||||||    
T  50015632 tattcaacacattcaaaaatcaaaaagtaactttttatacaaaaaatttatcaattgtttctattttttgaattcttaacaa 50015551  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 305 - 387
Target Start/End: Complemental strand, 39900337 - 39900257
Alignment:
Q  305 attcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttttgaatctttaacaaat 387  Q
    |||||||| ||||||||||||||||||| |||||| ||||||  |||||||||||||||| |||||||||||| |||||||||    
T  39900337 attcaacacattaaaacatcaaaaagta-attttt-tacataaaagttatcaattatttctattttttgaatccttaacaaat 39900257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 43471358 - 43471442
Alignment:
Q  304 tattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttttgaatctttaacaaata 388  Q
    ||||||||  ||||||||||||||||  |  ||||||||||||  | ||||||||||||| |||||||||||||||||| |||||    
T  43471358 tattcaacgcattaaaacatcaaaaaacaattttttatacataaaaattatcaattatttacattttttgaatctttaataaata 43471442  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 41657690 - 41657641
Alignment:
Q  280 ggagattttattttaagatttctgtattcaacatattaaaacatcaaaaa 329  Q
    |||||||||||||| |||||| |||||| |||||||||||||||||||||    
T  41657690 ggagattttattttgagatttatgtatttaacatattaaaacatcaaaaa 41657641  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 302 - 371
Target Start/End: Original strand, 42964818 - 42964887
Alignment:
Q  302 tgtattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttt 371  Q
    ||||||||||| ||| |||||||||||| ||  ||||| |||||   |||||||||||||||||||||||    
T  42964818 tgtattcaacacattgaaacatcaaaaaataactttttctacatgaaagttatcaattatttccattttt 42964887  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 297 - 387
Target Start/End: Original strand, 342976 - 343066
Alignment:
Q  297 atttctgtattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttttgaatctttaacaaat 387  Q
    |||| ||||||||||| ||| |||||| ||||| ||  ||||||| ||||  ||||||||||| |||| ||||||||||||||||||||||    
T  342976 atttatgtattcaacacattgaaacattaaaaaataactttttatgcataaaagttatcaattgtttctattttttgaatctttaacaaat 343066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 387
Target Start/End: Original strand, 2801303 - 2801394
Alignment:
Q  297 atttctgtattcaacatattaaaacatcaaaaagtagattttta-tacatactagttatcaattatttccattttttgaatctttaacaaat 387  Q
    |||| ||||||||||| |||||||||| ||||||||  |||||  ||||||  ||||||||||| |||| |||||||||||| |||||||||    
T  2801303 atttatgtattcaacacattaaaacattaaaaagtaacttttttctacataaaagttatcaattgtttctattttttgaatcattaacaaat 2801394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 30326668 - 30326732
Alignment:
Q  263 gataagtagtttaaaacggagattttattttaagatttctgtattcaacatattaaaacatcaaa 327  Q
    |||||| ||||||||| ||| ||||||| ||  ||||| ||||||||||| ||| ||||||||||    
T  30326668 gataagaagtttaaaatggaaattttatcttgggatttgtgtattcaacacattgaaacatcaaa 30326732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 307 - 385
Target Start/End: Original strand, 24487773 - 24487851
Alignment:
Q  307 tcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttttgaatctttaacaa 385  Q
    ||||||||||||||||||||||| ||  ||||| ||||||  ||||||||||| |||| |||||||||||| |||||||    
T  24487773 tcaacatattaaaacatcaaaaattaactttttctacataaaagttatcaattgtttctattttttgaatcattaacaa 24487851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 385
Target Start/End: Complemental strand, 31732158 - 31732069
Alignment:
Q  296 gatttctgtattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttttgaatctttaacaa 385  Q
    ||||| ||||||||||||||| ||||||||||||| |  |||||  ||||   |||||| |||||||||||||||||||||| |||||||    
T  31732158 gatttgtgtattcaacatattgaaacatcaaaaagcaactttttcaacatgaaagttatgaattatttccattttttgaatccttaacaa 31732069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 53248642 - 53248715
Alignment:
Q  304 tattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttttgaatc 377  Q
    ||||||||||||||||| | |||||||||  ||||||||||||  ||||||||||| |||| ||||||||||||    
T  53248642 tattcaacatattaaaaaaccaaaaagtaactttttatacataaaagttatcaattgtttctattttttgaatc 53248715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 376
Target Start/End: Complemental strand, 42461395 - 42461305
Alignment:
Q  286 tttattttaagatttctgtattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttttgaat 376  Q
    ||||| ||||||||| | ||||||||| ||| ||||||  |||||||  ||||| ||||||  ||||||||||| |||||| |||||||||    
T  42461395 tttatcttaagatttgtatattcaacacattgaaacatataaaagtaattttttttacataaaagttatcaattgtttccaatttttgaat 42461305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 378
Target Start/End: Complemental strand, 31752766 - 31752691
Alignment:
Q  302 tgtattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttttgaatct 378  Q
    ||||||||||| ||||||| || |||||||| ||||||  |||||  | ||||||||||||||| ||||||||||||    
T  31752766 tgtattcaacacattaaaatattaaaaagtacatttttcaacataaaatttatcaattatttcc-ttttttgaatct 31752691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 381
Target Start/End: Original strand, 43767326 - 43767402
Alignment:
Q  305 attcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttttgaatcttta 381  Q
    |||||||| |||||||||||||||||||  ||||| ||||||  | ||||||||| |||  ||||||| ||||||||    
T  43767326 attcaacacattaaaacatcaaaaagtaattttttctacataaaatttatcaattgtttatatttttttaatcttta 43767402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 383
Target Start/End: Complemental strand, 50037275 - 50037194
Alignment:
Q  302 tgtattcaacatattaaaacatcaaaaagtagatttttat-acatactagttatcaattatttccattttttgaatctttaac 383  Q
    ||||||||||| |||||||||| ||||| ||  ||||| | |||||  | ||||||||||||||| |||||||||||||||||    
T  50037275 tgtattcaacacattaaaacattaaaaaataattttttttaacataaaatttatcaattatttcc-ttttttgaatctttaac 50037194  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 272 - 385
Target Start/End: Complemental strand, 41360996 - 41360883
Alignment:
Q  272 tttaaaacggagattttattttaagatttctgtattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttt 371  Q
    ||||||| |||| |||||| || |||||| | |||| |||||||| ||||||||||| | |   |||| ||||||  ||||||||||| ||| |||||||    
T  41360996 tttaaaatggaggttttatattgagatttgtatatttaacatattgaaacatcaaaaggcaacattttctacataaaagttatcaattgttttcattttt 41360897  T
Q  372 tgaatctttaacaa 385  Q
    ||||||||||||||    
T  41360896 tgaatctttaacaa 41360883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 371
Target Start/End: Original strand, 6562644 - 6562730
Alignment:
Q  284 attttattttaagatttctgtattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttt 371  Q
    |||||||||||| |||| ||||||||||| ||| ||||||||||||  | ||| || ||||||  | |||||||||||||| ||||||    
T  6562644 attttattttaaaatttgtgtattcaacacattgaaacatcaaaaacaacattgttttacata-aaattatcaattatttctattttt 6562730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 385
Target Start/End: Complemental strand, 9784452 - 9784386
Alignment:
Q  314 attaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttttgaatctttaacaa 385  Q
    ||||||||||||||||||     ||||||||||  |||||||||||||||| |||||||||||  |||||||    
T  9784452 attaaaacatcaaaaagt-----tttatacataaaagttatcaattatttctattttttgaattcttaacaa 9784386  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 339
Target Start/End: Original strand, 907369 - 907438
Alignment:
Q  270 agtttaaaacggagattttattttaagatttctgtattcaacatattaaaacatcaaaaagtagattttt 339  Q
    ||||||||| | | |||||||||||| | || ||||||| ||||||||||| |||||||| || ||||||    
T  907369 agtttaaaatgaaaattttattttaaaacttgtgtattcgacatattaaaatatcaaaaaataaattttt 907438  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 330
Target Start/End: Original strand, 33338880 - 33338925
Alignment:
Q  285 ttttattttaagatttctgtattcaacatattaaaacatcaaaaag 330  Q
    ||||||||||| | || |||||||||||||||||||||| ||||||    
T  33338880 ttttattttaaaaattgtgtattcaacatattaaaacattaaaaag 33338925  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 372
Target Start/End: Original strand, 19608811 - 19608879
Alignment:
Q  304 tattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccatttttt 372  Q
    ||||||||| ||| |||||| ||||||||  ||||| ||||||  | |||||||||||||| |||||||    
T  19608811 tattcaacacattgaaacattaaaaagtaactttttctacataaaaattatcaattatttctatttttt 19608879  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 383
Target Start/End: Original strand, 5497749 - 5497860
Alignment:
Q  272 tttaaaacggagattttattttaagatttctgtattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttt 371  Q
    ||||||| ||| ||||||| |||| |||| |||||| || | | | |||||||||||||||  ||||| ||||||  ||||||||| | ||||||||||     
T  5497749 tttaaaatggaaattttatcttaaaatttatgtatttaatacaatgaaacatcaaaaagtaactttttctacataaaagttatcaactgtttccattttc 5497848  T
Q  372 tgaatctttaac 383  Q
    |||||| |||||    
T  5497849 tgaatccttaac 5497860  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 371
Target Start/End: Original strand, 46695633 - 46695707
Alignment:
Q  297 atttctgtattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttt 371  Q
    |||| |||||||| ||||||||||||||||||| ||  ||||||||||||  | ||||| |||||||| ||||||    
T  46695633 atttgtgtattcagcatattaaaacatcaaaaaataattttttatacataaaaattatcgattatttctattttt 46695707  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 302 - 379
Target Start/End: Original strand, 37626974 - 37627051
Alignment:
Q  302 tgtattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttttgaatctt 379  Q
    ||||||||||| ||| |||||| ||||||||  ||||| ||||||  ||||||||||| |||| ||||||| ||||||    
T  37626974 tgtattcaacacatttaaacattaaaaagtaactttttctacataaaagttatcaattgtttctattttttaaatctt 37627051  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 263 - 332
Target Start/End: Original strand, 42098915 - 42098984
Alignment:
Q  263 gataagtagtttaaaacggagattttattttaagatttctgtattcaacatattaaaacatcaaaaagta 332  Q
    |||||| ||||||||| | | ||||||||||| ||||| | ||||||| ||||| |||||||||||||||    
T  42098915 gataagaagtttaaaatgaaaattttattttaggatttgtatattcaatatattgaaacatcaaaaagta 42098984  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 370
Target Start/End: Original strand, 18915551 - 18915636
Alignment:
Q  284 attttattttaagatttctgtattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccatttt 370  Q
    ||||||||||| ||||| |||||||||||||  |||||||||||||  |  ||||| ||||||  | ||||||||| ||||||||||    
T  18915551 attttattttaggatttatgtattcaacata-aaaaacatcaaaaaacaattttttttacataaaaattatcaattgtttccatttt 18915636  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 11123491 - 11123523
Alignment:
Q  297 atttctgtattcaacatattaaaacatcaaaaa 329  Q
    |||| ||||||||||||||||||||||||||||    
T  11123491 atttgtgtattcaacatattaaaacatcaaaaa 11123523  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 397
Target Start/End: Complemental strand, 26009762 - 26009663
Alignment:
Q  297 atttctgtattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttttgaatctttaacaaatacacttgtt 396  Q
    |||| ||||||||| ||||| ||| || |||||| |  ||||||||||||  ||||| |||||||||| | |||| ||||| ||||||||| | ||||||    
T  26009762 atttgtgtattcaaaatattgaaatattaaaaagcaactttttatacataaaagttagcaattatttcta-ttttagaatccttaacaaatgcccttgtt 26009664  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 263 - 372
Target Start/End: Original strand, 37744013 - 37744122
Alignment:
Q  263 gataagtagtttaaaacggagattttattttaagatttctgtattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatt 362  Q
    |||||| |||||||||   | ||||||| |||| |||| ||||||||| ||||||||||||||||| |||  ||| | ||||||  | |||||||| |||    
T  37744013 gataagaagtttaaaataaaaattttatcttaaaatttatgtattcaatatattaaaacatcaaaaggtaattttgtttacataaaaattatcaatcatt 37744112  T
Q  363 tccatttttt 372  Q
    || |||||||    
T  37744113 tctatttttt 37744122  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 393
Target Start/End: Original strand, 26489332 - 26489376
Alignment:
Q  349 agttatcaattatttccattttttgaatctttaacaaatacactt 393  Q
    |||||||||||||||| |||||||||||| ||||||||| |||||    
T  26489332 agttatcaattatttctattttttgaatcattaacaaatgcactt 26489376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 385
Target Start/End: Original strand, 38788768 - 38788839
Alignment:
Q  314 attaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttttgaatctttaacaa 385  Q
    |||||||||||||||||||  ||||| |||||   |||| |||||| |||| |||||||||||| |||||||    
T  38788768 attaaaacatcaaaaagtaactttttctacatgaaagttgtcaattgtttctattttttgaatccttaacaa 38788839  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 297 - 389
Target Start/End: Original strand, 1944768 - 1944860
Alignment:
Q  297 atttctgtattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttttgaatctttaacaaatac 389  Q
    |||| ||||||||| | ||| |||||| ||||||||  ||||| |  |||  ||||||||||| |||  |||||| |||||||||||||||||    
T  1944768 atttgtgtattcaatacattgaaacattaaaaagtaattttttctgtataaaagttatcaattgtttatatttttggaatctttaacaaatac 1944860  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 400
Target Start/End: Original strand, 35116887 - 35116989
Alignment:
Q  297 atttctgtattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttttgaatctttaacaaatacacttgtt 396  Q
    |||| ||||||||| | ||| |||| |||||||| | |||||| ||||||  | |||| |||||||||| ||||||||||| |||||||  ||| |||||    
T  35116887 atttgtgtattcaatacattgaaacttcaaaaaggaaatttttctacataaaatttataaattatttcc-ttttttgaatccttaacaaggacatttgtt 35116985  T
Q  397 agca 400  Q
    ||||    
T  35116986 agca 35116989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 386
Target Start/End: Original strand, 47188422 - 47188535
Alignment:
Q  272 tttaaaacggagattttattttaagatttctgtattcaacatattaaaacatcaaaaagtagatttttatacatactagttatcaattatttccattttt 371  Q
    ||||||| ||| ||||| | |||| |||| || | |||||| ||||||| |||||||||||  ||||| ||||||  |||||| |||| |||| | ||||    
T  47188422 tttaaaatggaaattttgtcttaaaatttgtgaactcaacacattaaaatatcaaaaagtaactttttctacataaaagttattaattgtttcta-tttt 47188520  T
Q  372 tgaatctttaacaaa 386  Q
    |||||| ||||||||    
T  47188521 tgaatccttaacaaa 47188535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 372
Target Start/End: Original strand, 43638973 - 43639062
Alignment:
Q  284 attttattttaagatttctgtattcaacatattaaaacatcaaaaag-tagatttttatacatactagttatcaattatttccatttttt 372  Q
    |||||||||| |||||| ||||||||| ||||| |||||| |||||  ||  ||||| ||||||  ||||||||||| || |||||||||    
T  43638973 attttattttgagatttgtgtattcaatatattgaaacataaaaaaaataactttttctacataaaagttatcaattgttaccatttttt 43639062  T

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Target: scaffold0392 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 405
Target Start/End: Complemental strand, 13709 - 13664
Alignment:
Q  360 atttccattttttgaatctttaacaaata-cacttgttagcaagacc 405  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||    
T  13709 atttccatttttt-aatctttaacaaatatcacttgttagcaagacc 13664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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